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AT3G14180.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
nucleus 1.000
ASURE: nucleus
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
Description (TAIR10) protein_coding : sequence-specific DNA binding transcription factors
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
sequence-specific DNA binding transcription factors; BEST Arabidopsis thaliana protein match is: 6B-interacting protein 1-like 1 (TAIR:AT1G54060.1); Has 515 Blast hits to 439 proteins in 35 species: Archae - 0; Bacteria - 0; Metazoa - 58; Fungi - 2; Plants - 432; Viruses - 0; Other Eukaryotes - 23 (source: NCBI BLink).
Protein Annotations
BioGrid:5969eggNOG:ENOG410IN2BeggNOG:ENOG410Z419EMBL:AP000600EMBL:AY072187EMBL:AY113853EMBL:CP002686
EnsemblPlants:AT3G14180EnsemblPlants:AT3G14180.1entrez:820635GeneID:820635Genevisible:Q9LJG8GO:GO:0003677GO:GO:0003700
GO:GO:0005634GO:GO:0006351GO:GO:0006355GO:GO:0009793GO:GO:0010431Gramene:AT3G14180.1hmmpanther:PTHR31307
hmmpanther:PTHR31307:SF4HOGENOM:HOG000238159InParanoid:Q9LJG8IntAct:Q9LJG8KEGG:ath:AT3G14180ncoils:CoilOMA:FMKTQVE
PaxDb:Q9LJG8Pfam:PF13837Pfam:Q9LJG8PhylomeDB:Q9LJG8PRIDE:Q9LJG8PRO:PR:Q9LJG8ProteinModelPortal:Q9LJG8
Proteomes:UP000006548RefSeq:NP_188034.1STRING:3702.AT3G14180.1TAIR:AT3G14180UniGene:At.39278UniProt:Q9LJG8
Coordinates (TAIR10) chr3:-:4707290..4708621
Molecular Weight (calculated) 48316.90 Da
IEP (calculated) 10.27
GRAVY (calculated) -0.86
Length 443 amino acids
Sequence (TAIR10)
(BLAST)
001: MEDDEDIRSQ GSDSPDPSSS PPAGRITVTV ASAGPPSYSL TPPGNSSQKD PDALALALLP IQASGGGNNS SGRPTGGGGR EDCWSEAATA VLIDAWGERY
101: LELSRGNLKQ KHWKEVAEIV SSREDYGKIP KTDIQCKNRI DTVKKKYKQE KVRIANGGGR SRWVFFDKLD RLIGSTAKIP TATSGVSGPV GGLHKIPMGI
201: PMGSRSNLYH QQAKAATPPF NNLDRLIGAT ARVSAASFGG SGGGGGGGSV NVPMGIPMSS RSAPFGQQGR TLPQQGRTLP QQQQQGMMVK RCSESKRWRF
301: RKRNASDSDS ESEAAMSDDS GDSLPPPPLS KRMKTEEKKK QDGDGVGNKW RELTRAIMRF GEAYEQTENA KLQQVVEMEK ERMKFLKELE LQRMQFFVKT
401: QLEISQLKQQ HGRRMGNTSN DHHHSRKNNI NAIVNNNNDL GNN
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)