suba logo
AT3G10080.1
Subcellular Consensus
(Prediction and Experimental)

min: heatmap :max

.
SUBAcon:
extracellular 1.000
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : RmlC-like cupins superfamily protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
RmlC-like cupins superfamily protein; FUNCTIONS IN: manganese ion binding, nutrient reservoir activity; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system, apoplast; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Cupin, RmlC-type (InterPro:IPR011051), Cupin 1 (InterPro:IPR006045), RmlC-like jelly roll fold (InterPro:IPR014710), Germin (InterPro:IPR001929); BEST Arabidopsis thaliana protein match is: RmlC-like cupins superfamily protein (TAIR:AT1G18980.1); Has 1595 Blast hits to 1591 proteins in 125 species: Archae - 0; Bacteria - 59; Metazoa - 0; Fungi - 57; Plants - 1448; Viruses - 0; Other Eukaryotes - 31 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410IW0NeggNOG:ENOG410YH14EMBL:AC010927EMBL:AY085880EMBL:CP002686EnsemblPlants:AT3G10080EnsemblPlants:AT3G10080.1
entrez:820169ExpressionAtlas:Q9SR72Gene3D:2.60.120.10GeneID:820169Genevisible:Q9SR72GO:GO:0030145GO:GO:0045735
GO:GO:0048046Gramene:AT3G10080.1hmmpanther:PTHR31238hmmpanther:PTHR31238:SF48HOGENOM:HOG000235000InParanoid:Q9SR72InterPro:IPR001929
InterPro:IPR006045InterPro:IPR011051InterPro:IPR014710KEGG:ath:AT3G10080OMA:MEEGEMMPaxDb:Q9SR72Pfam:PF00190
Pfam:Q9SR72PhylomeDB:Q9SR72PRIDE:Q9SR72PRINTS:PR00325PRO:PR:Q9SR72ProteinModelPortal:Q9SR72Proteomes:UP000006548
RefSeq:NP_187619.1SMART:SM00835SMR:Q9SR72STRING:3702.AT3G10080.1SUPFAM:SSF51182TAIR:AT3G10080UniGene:At.39994
UniProt:A3KPE5UniProt:Q9SR72
Coordinates (TAIR10) chr3:-:3107476..3108159
Molecular Weight (calculated) 24780.90 Da
IEP (calculated) 6.71
GRAVY (calculated) -0.05
Length 227 amino acids
Sequence (TAIR10)
(BLAST)
001: MEANTLFLLK ALCLLCFNVC FTLASDPDPI QDFCIPKPVT SPYHDHHFST NLPCKNSSEV TTEDFVFSGL KTAGNFTETG FATVPVGPEN FPGLNTLGIS
101: FVRADLKPGS INPPHYHPRA TEVAHLVKGR VYSGFVDSNN KVYAKVMEEG EMMVYPKGLV HFQMNVGDVT ATIVGGLNSQ NPGIQKIPSV VFGSGINEEL
201: LMKAFGLSLK QIGTLKKRFD PVMSNEH
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)