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AT2G04850.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
extracellular 0.953
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : Auxin-responsive family protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
Auxin-responsive family protein; CONTAINS InterPro DOMAIN/s: Cytochrome b561, eukaryote (InterPro:IPR004877), Uncharacterised conserved protein UCP037471 (InterPro:IPR017214), Protein of unknown function DUF568, DOMON-like (InterPro:IPR007613), DOMON related (InterPro:IPR005018), Cytochrome b561/ferric reductase transmembrane (InterPro:IPR006593); BEST Arabidopsis thaliana protein match is: Auxin-responsive family protein (TAIR:AT3G25290.2); Has 646 Blast hits to 646 proteins in 111 species: Archae - 0; Bacteria - 4; Metazoa - 94; Fungi - 69; Plants - 456; Viruses - 0; Other Eukaryotes - 23 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410ISUEeggNOG:ENOG410YDS9EMBL:AC006955EMBL:AY084618
EMBL:BT025973EMBL:CP002685EMBL:DQ069802EnsemblPlants:AT2G04850
EnsemblPlants:AT2G04850.1entrez:815031GeneID:815031Genevisible:Q9SJ74
GO:GO:0016021GO:GO:0046872GO:GO:0055114Gramene:AT2G04850.1
hmmpanther:PTHR23130hmmpanther:PTHR23130:SF60HOGENOM:HOG000239819InParanoid:Q9SJ74
InterPro:IPR005018InterPro:IPR006593InterPro:IPR017214KEGG:ath:AT2G04850
OMA:WFYVHAGPaxDb:Q9SJ74Pfam:PF03188Pfam:PF04526
Pfam:Q9SJ74Pfscan:PS50836Pfscan:PS50939PhylomeDB:Q9SJ74
PIR:C84462PIRSF:PIRSF037471PRIDE:Q9SJ74PRO:PR:Q9SJ74
PROSITE:PS50836PROSITE:PS50939ProteinModelPortal:Q9SJ74Proteomes:UP000006548
RefSeq:NP_565316.1SMART:SM00665STRING:3702.AT2G04850.1TAIR:AT2G04850
TMHMM:TMhelixUniGene:At.41253UniGene:At.68913UniProt:Q9SJ74
Coordinates (TAIR10) chr2:+:1704298..1705608
Molecular Weight (calculated) 43878.20 Da
IEP (calculated) 9.98
GRAVY (calculated) 0.20
Length 404 amino acids
Sequence (TAIR10)
(BLAST)
001: MATLILSFLL LLLATKLPES LAGHCTTTTA TKSFEKCISL PTQQASIAWT YHPHNATLDL CFFGTFISPS GWVGWGINPD SPAQMTGSRV LIAFPDPNSG
101: QLILLPYVLD SSVKLQKGPL LSRPLDLVRL SSSSASLYGG KMATIRNGAS VQIYASVKLS SNNTKIHHVW NRGLYVQGYS PTIHPTTSTD LSSFSTFDVT
201: SGFATVNQNS GSRALKVTHG VVNAISWGFL LPAGAVTARY LRQMQSIGPT WFYIHAAIQL TGFLLGTIGF SIGIVLGHNS PGVTYGLHRS LGIATFTAAA
301: LQTLALLFRP KTTNKFRRYW KSYHHFVGYA CVVMGVVNVF QGFEVLREGR SYAKLGYCLC LSTLVGVCVA MEVNSWVVFC RKAKEEKMKR DGLTGVDRCS
401: GSHS
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)