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AT3G08740.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
plastid 1.000
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:25900983 (2015): Golgi trans-Golgi network multivesicular body
  • PMID:24872594 (2014): plastid plastid stroma
  • PMID:24361574 (2014): plastid plastid stroma
  • PMID:23851315 (2013): plastid
  • PMID:21539947 (2011): plastid plastid stroma
  • PMID:21531424 (2011): plastid
  • PMID:20423899 (2010): plastid
  • PMID:20061580 (2010): plastid plastid stroma
  • PMID:18633119 (2008): plastid plastid stroma
  • PMID:18431481 (2008): plastid plastid stroma
  • PMID:16207701 (2006): plastid
FP Images

Arabidopsis cell culture (plastidal marker)

At3g08740-GFP
(full-length)
plastidal marker-RFPoverlay

Images by Sandra Tanz

onion epidermal cell layer (plastidal marker)

At3g08740-GFP
(full-length)
plastidal marker-RFPoverlay

Images by Sandra Tanz
SUBAcon links
AGI-AGI relationships
Coexpression PPI
Description (TAIR10) protein_coding : elongation factor P (EF-P) family protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
elongation factor P (EF-P) family protein; FUNCTIONS IN: translation elongation factor activity; INVOLVED IN: translational elongation; LOCATED IN: chloroplast, chloroplast stroma; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Translation elongation factor P (InterPro:IPR011768), Translation elongation factor P/YeiP, conserved site (InterPro:IPR013852), Nucleic acid-binding, OB-fold (InterPro:IPR012340), Translation elongation factor, KOW-like (InterPro:IPR013185), Translation protein SH3-like, subgroup (InterPro:IPR014722), Elongation factor P, C-terminal (InterPro:IPR015365), Translation protein SH3-like (InterPro:IPR008991), Nucleic acid-binding, OB-fold-like (InterPro:IPR016027), Translation elongation factor P/YeiP, central (InterPro:IPR001059), Translation elongation factor P/YeiP (InterPro:IPR020599); BEST Arabidopsis thaliana protein match is: elongation factor P (EF-P) family protein (TAIR:AT4G26310.1); Has 10499 Blast hits to 10498 proteins in 2700 species: Archae - 4; Bacteria - 7892; Metazoa - 1; Fungi - 0; Plants - 81; Viruses - 0; Other Eukaryotes - 2521 (source: NCBI BLink).
Protein Annotations
eggNOG:COG0231eggNOG:ENOG410IFQKEMBL:AY063783EMBL:AY086204EMBL:AY117274EMBL:CP002686EnsemblPlants:AT3G08740
EnsemblPlants:AT3G08740.1entrez:820021Gene3D:2.30.30.30Gene3D:2.40.50.140GeneID:820021GO:GO:0003746GO:GO:0009507
GO:GO:0009570Gramene:AT3G08740.1HAMAP:MF_00141hmmpanther:PTHR30053hmmpanther:PTHR30053:SF3HOGENOM:HOG000010047IntAct:Q8VZW6
InterPro:IPR001059InterPro:IPR008991InterPro:IPR011768InterPro:IPR012340InterPro:IPR013185InterPro:IPR013852InterPro:IPR014722
InterPro:IPR015365KEGG:ath:AT3G08740KO:K02356OMA:DYVFMDMPfam:PF01132Pfam:PF08207Pfam:PF09285
PhylomeDB:Q8VZW6PROSITE:PS01275Proteomes:UP000006548RefSeq:NP_566333.1scanprosite:PS01275SMART:SM00841SMART:SM01185
SMR:Q8VZW6STRING:3702.AT3G08740.1SUPFAM:SSF50104SUPFAM:SSF50249TAIR:AT3G08740TIGRfam:TIGR00038TIGRFAMs:TIGR00038
UniGene:At.27166UniProt:Q8VZW6
Coordinates (TAIR10) chr3:-:2654788..2656154
Molecular Weight (calculated) 26229.60 Da
IEP (calculated) 8.59
GRAVY (calculated) -0.18
Length 236 amino acids
Sequence (TAIR10)
(BLAST)
001: MAGRAIFSVS CSSTPSLCIP YSTASFSSMN RLALPAVRIS PRTNRFPRIH CSMSANDIKA GTNIEVDGAP WRVLEFLHVK PGKGAAFVRT KIRNYVNGST
101: VERTFRAGIS VEEANIYKET KQFTYKDGSQ FVFMDLTTYE ETRLNESDMG EKTKWLKEGM DCILLYWKDK VIDFDLPITV KLKVVDVDPG LRGDTVQGGS
201: KPATMETGAI VAVPLFINVG EEIFVDTRTG AYMNRA
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)