AT3G04350.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:cytosol 0.557 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : Plant protein of unknown function (DUF946) | ||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
Plant protein of unknown function (DUF946); CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF946 (InterPro:IPR009291); BEST Arabidopsis thaliana protein match is: Plant protein of unknown function (DUF946) (TAIR:AT5G18490.1); Has 389 Blast hits to 369 proteins in 101 species: Archae - 0; Bacteria - 21; Metazoa - 15; Fungi - 143; Plants - 203; Viruses - 0; Other Eukaryotes - 7 (source: NCBI BLink). | ||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr3:-:1153972..1156469 | ||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 63012.30 Da | ||||||||||||||||||||||||||||
| IEP (calculated) | 5.03 | ||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.33 | ||||||||||||||||||||||||||||
| Length | 567 amino acids | ||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MFGCDCFYWS RGISELDSES SEPKPFSLPA PLPSWPQGKG FATGRISLGE IEVVKITKFH RVWSSDSSHD KSKRATFYRA DDIPEGFHCL GHYCQPTDQP 101: LRGYVLAART SKAVNADDFP PLKKPVSYSL VWSADSEKNG GGYFWLPNPP VGYRAMGVIV THEPGEPETE EVRCVREDLT ESCETSEMIL EVGSSKKSNG 201: SSSPFSVWST RPCERGMLSQ GVAVGSFFCC TYDLSSERTV PDIGCLKNLD PTLHAMPNLD QVHAVIEHFG PTVYFHPEEA YMPSSVQWFF KNGALLYRSG 301: KSEGQPINST GSNLPAGGCN DMDFWIDLPE DEEAKSNLKK GNLESSELYV HVKPALGGTF TDIVMWIFCP FNGPATLKIG LFTLPMTRIG EHVGDWEHFT 401: FRICNFSGEL WQMFFSQHSG GGWVDASDIE FVKDNKPAVY SSKHGHASFP HPGMYLQGSS KLGIGVRNDV AKSKYIVDSS QRYVIVAAEY LGKGAVIEPC 501: WLQYMREWGP TIAYDSGSEI NKIMNLLPLV VRFSIENIVD LFPIALYGEE GPTGPKEKDN WEGDEMC |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)