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AT3G02555.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
nucleus 1.000
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding :
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G16110.1); Has 130 Blast hits to 130 proteins in 18 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 130; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).
Protein Annotations
DNASU:820627eggNOG:ENOG410IZR0eggNOG:ENOG410YS9FEMBL:AY084975
EMBL:BT025733EMBL:CP002686EnsemblPlants:AT3G02555EnsemblPlants:AT3G02555.1
entrez:820627GeneID:820627Gramene:AT3G02555.1hmmpanther:PTHR33384
hmmpanther:PTHR33384:SF2HOGENOM:HOG000244166KEGG:ath:AT3G02555OMA:GEDEVIC
PhylomeDB:Q8LF93Proteomes:UP000006548RefSeq:NP_566176.1TAIR:AT3G02555
UniGene:At.23845UniProt:Q8LF93
Coordinates (TAIR10) chr3:-:540024..540955
Molecular Weight (calculated) 17745.10 Da
IEP (calculated) 9.91
GRAVY (calculated) -0.42
Length 162 amino acids
Sequence (TAIR10)
(BLAST)
001: MNHCSLQQNA FLSREESRGF VPIYSHPVDS VVCPKPRRAN NVIRPFRLHF SLSGADDVCD SKAGEDLLDI FRRKESVSSR SPPFFLGSPP SRAANPLAQD
101: ARFGDEKLNT VSPSLSPLLP SASRVKSGCG RMKFGVKPAT VRVEGFDCLN RDRPNSSIPA MA
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)