AT2G43230.1
|
Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:cytosol 0.915 What is SUBAcon? |
|
||||||||||||||||||||||||||||||||||||||||||||
| Experimental Localisations and PPI |
|
||||||||||||||||||||||||||||||||||||||||||||
|
SUBAcon links
AGI-AGI relationships |
|
||||||||||||||||||||||||||||||||||||||||||||
| Description (TAIR10) | protein_coding : Protein kinase superfamily protein | ||||||||||||||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
|||||||||||||||||||||||||||||||||||||||||||||
| Computational Description (TAIR10) |
Protein kinase superfamily protein; FUNCTIONS IN: protein tyrosine kinase activity, protein kinase activity, kinase activity, ATP binding; INVOLVED IN: protein amino acid phosphorylation; LOCATED IN: plasma membrane; EXPRESSED IN: 11 plant structures; EXPRESSED DURING: L mature pollen stage, M germinated pollen stage, 4 anthesis, C globular stage, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Protein kinase, ATP binding site (InterPro:IPR017441), Protein kinase, catalytic domain (InterPro:IPR000719), Tyrosine-protein kinase, active site (InterPro:IPR008266), Serine-threonine/tyrosine-protein kinase (InterPro:IPR001245), Protein kinase-like domain (InterPro:IPR011009); BEST Arabidopsis thaliana protein match is: Protein kinase superfamily protein (TAIR:AT3G59350.3); Has 105273 Blast hits to 104337 proteins in 4385 species: Archae - 99; Bacteria - 13148; Metazoa - 38275; Fungi - 8089; Plants - 30764; Viruses - 287; Other Eukaryotes - 14611 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||||||||||
| Protein Annotations |
|
||||||||||||||||||||||||||||||||||||||||||||
| Coordinates (TAIR10) | chr2:+:17966475..17968446 | ||||||||||||||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 45368.60 Da | ||||||||||||||||||||||||||||||||||||||||||||
| IEP (calculated) | 9.93 | ||||||||||||||||||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.47 | ||||||||||||||||||||||||||||||||||||||||||||
| Length | 406 amino acids | ||||||||||||||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MDRDFHRRGQ VANDRTQSNF VRLDKPRAVD DLDIGKRGKM RRWLCCSCRV QESYPSAENN RLKTPPTRHY DYGRNNKKTP APVKPPVLKE PPPIDVPAMS 101: LVELKEKTQN FGSKALIGEG SYGRVYYANF NDGKAVAVKK LDNASEPETN VEFLTQVSKV SRLKSDNFVQ LLGYCVEGNL RVLAYEFATM RSLHDILHGR 201: KGVQGAQPGP TLEWMQRVRV AVDAAKGLEY LHEKVQPAVI HRDIRSSNVL IFEDFKAKIA DFNLSNQAPD MAARLHSTRV LGTFGYHAPE YAMTGQLTQK 301: SDVYSFGVVL LELLTGRKPV DHTMPRGQQS LVTWATPRLS EDKVKQCVDP KLKGEYPPKA VAKLAAVAAL CVQYEAEFRP NMSIVVKALQ PLLRSATAAA 401: PPTPQP |
||||||||||||||||||||||||||||||||||||||||||||
| See Also |
|
||||||||||||||||||||||||||||||||||||||||||||
Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)