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AT2G41410.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
plasma membrane 1.000
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:26781341 (2016): plasma membrane
  • PMID:22318864 (2012): plasma membrane
  • PMID:22215637 (2012): plasma membrane
  • PMID:18686298 (2008): plant-type vacuole plant-type vacuole membrane
  • PMID:17317660 (2007): plasma membrane
SUBAcon links
AGI-AGI relationships
Coexpression PPI
Description (TAIR10) protein_coding : Calcium-binding EF-hand family protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
Calcium-binding EF-hand family protein; FUNCTIONS IN: calcium ion binding; LOCATED IN: plasma membrane; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: EF-Hand 1, calcium-binding site (InterPro:IPR018247), EF-HAND 2 (InterPro:IPR018249), EF-hand-like domain (InterPro:IPR011992), Calcium-binding EF-hand (InterPro:IPR002048), EF-hand (InterPro:IPR018248); BEST Arabidopsis thaliana protein match is: Calcium-binding EF-hand family protein (TAIR:AT3G10190.1); Has 13145 Blast hits to 9942 proteins in 1264 species: Archae - 0; Bacteria - 67; Metazoa - 5109; Fungi - 2319; Plants - 3772; Viruses - 0; Other Eukaryotes - 1878 (source: NCBI BLink).
Protein Annotations
DNASU:818739eggNOG:COG5126eggNOG:KOG0027EMBL:AC005662EMBL:AF360307EMBL:AY056357EMBL:AY084696
EMBL:CP002685EMBL:X68054EnsemblPlants:AT2G41410EnsemblPlants:AT2G41410.1entrez:818739Gene3D:1.10.238.10GeneID:818739
Genevisible:P30188GO:GO:0005509GO:GO:0005886Gramene:AT2G41410.1hmmpanther:PTHR10891hmmpanther:PTHR10891:SF590HOGENOM:HOG000233018
InParanoid:P30188IntAct:P30188InterPro:IPR002048InterPro:IPR011992InterPro:IPR018247iPTMnet:P30188KEGG:ath:AT2G41410
KO:K13448OMA:CDSEMRDPaxDb:P30188Pfam:P30188Pfam:PF13202Pfam:PF13499Pfscan:PS50222
PhylomeDB:P30188PIR:D84841PIR:S29595PRIDE:P30188PRO:PR:P30188PROSITE:PS00018PROSITE:PS50222
ProteinModelPortal:P30188Proteomes:UP000006548RefSeq:NP_181672.1scanprosite:PS00018SMART:SM00054SMR:P30188STRING:3702.AT2G41410.1
SUPFAM:SSF47473TAIR:AT2G41410UniGene:At.24025UniGene:At.72696UniProt:P30188
Coordinates (TAIR10) chr2:-:17262085..17262735
Molecular Weight (calculated) 23444.40 Da
IEP (calculated) 4.49
GRAVY (calculated) -0.36
Length 216 amino acids
Sequence (TAIR10)
(BLAST)
001: MKLAASLNRL SPKRLFRTKS KASVSRSEPS SFSSNASSSS SDGSYGNLKQ GPTATPISVL PQNSGDFYTE LVQAFKLIDR DDDGVVSRGD LAALISRLSH
101: EPPSQEEVSL MLREVDGGDG GCISLEDLAS RVAGTSGEGS VETEELREVF EIFDVDRNGK ISAEELHRVF GVIGDERCTL EECMRMIATV DGNGDGFVCF
201: DDFCRMMVPA MNDHHH
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)