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AT3G50770.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
plasma membrane 0.946
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
Description (TAIR10) protein_coding : calmodulin-like 41
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
calmodulin-like 41 (CML41); FUNCTIONS IN: calcium ion binding; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 17 plant structures; EXPRESSED DURING: 11 growth stages; CONTAINS InterPro DOMAIN/s: EF-Hand 1, calcium-binding site (InterPro:IPR018247), EF-HAND 2 (InterPro:IPR018249), EF-hand-like domain (InterPro:IPR011992), Calcium-binding EF-hand (InterPro:IPR002048), EF-hand (InterPro:IPR018248); BEST Arabidopsis thaliana protein match is: calmodulin-like 38 (TAIR:AT1G76650.3); Has 18492 Blast hits to 11277 proteins in 1402 species: Archae - 0; Bacteria - 68; Metazoa - 6531; Fungi - 4523; Plants - 4805; Viruses - 0; Other Eukaryotes - 2565 (source: NCBI BLink).
Protein Annotations
BioGrid:9559DNASU:824241eggNOG:COG5126eggNOG:KOG0027
EMBL:AL049862EMBL:AY099647EMBL:AY128835EMBL:CP002686
EnsemblPlants:AT3G50770EnsemblPlants:AT3G50770.1entrez:824241Gene3D:1.10.238.10
GeneID:824241Genevisible:Q8L3R2GO:GO:0005509Gramene:AT3G50770.1
hmmpanther:PTHR10891hmmpanther:PTHR10891:SF568HOGENOM:HOG000233018InParanoid:Q8L3R2
IntAct:Q8L3R2InterPro:IPR002048InterPro:IPR011992InterPro:IPR018247
iPTMnet:Q8L3R2KEGG:ath:AT3G50770KO:K13448OMA:HMSHEDA
PaxDb:Q8L3R2Pfam:PF13499Pfam:PF13833Pfam:Q8L3R2
Pfscan:PS50222PhylomeDB:Q8L3R2PIR:T08398PRIDE:Q8L3R2
PRO:PR:Q8L3R2PROSITE:PS00018PROSITE:PS50222ProteinModelPortal:Q8L3R2
Proteomes:UP000006548RefSeq:NP_190646.1scanprosite:PS00018SMART:SM00054
SMR:Q8L3R2STRING:3702.AT3G50770.1SUPFAM:SSF47473TAIR:AT3G50770
tair10-symbols:CML41UniGene:At.35457UniProt:Q8L3R2
Coordinates (TAIR10) chr3:+:18873987..18874604
Molecular Weight (calculated) 23045.70 Da
IEP (calculated) 4.88
GRAVY (calculated) -0.74
Length 205 amino acids
Sequence (TAIR10)
(BLAST)
001: MATQKEKPSS NSFKWFSTKT LKLNLSFQNR RRSPKSNSSS TLNSPRSNSD DNNNIKSHQA SKEELRQVFS HFDSDGDGKI SAFELRHYFG SVGEYISHEA
101: AQEAINEVDT DADGSLGFED FVGLMTRRDL YGDGEVDGDG ELKTAFEMFE VEKGSGCITP KGLQKMLVKL GESRTYGECE AMIKFYDIDG NGILDFHEFR
201: QMMTV
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)