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AT2G28490.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
extracellular 1.000
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:21109274 (2011): extracellular region
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : RmlC-like cupins superfamily protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
RmlC-like cupins superfamily protein; FUNCTIONS IN: nutrient reservoir activity; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: seed; EXPRESSED DURING: seedling growth; CONTAINS InterPro DOMAIN/s: Cupin, RmlC-type (InterPro:IPR011051), Cupin 1 (InterPro:IPR006045), RmlC-like jelly roll fold (InterPro:IPR014710); BEST Arabidopsis thaliana protein match is: RmlC-like cupins superfamily protein (TAIR:AT2G18540.1); Has 66502 Blast hits to 16031 proteins in 1327 species: Archae - 49; Bacteria - 29374; Metazoa - 18792; Fungi - 2857; Plants - 8517; Viruses - 833; Other Eukaryotes - 6080 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410IHXPEMBL:AC006587EMBL:BT008623EMBL:CP002685
EnsemblPlants:AT2G28490EnsemblPlants:AT2G28490.1entrez:817397Gene3D:2.60.120.10
GeneID:817397GO:GO:0009506GO:GO:0045735Gramene:AT2G28490.1
hmmpanther:PTHR31189hmmpanther:PTHR31189:SF2HOGENOM:HOG000240039InterPro:IPR006045
InterPro:IPR011051InterPro:IPR014710iPTMnet:Q9SK09KEGG:ath:AT2G28490
OMA:MAPHMNPPaxDb:Q9SK09Pfam:PF00190PhylomeDB:Q9SK09
PIR:E84685ProMEX:Q9SK09Proteomes:UP000006548RefSeq:NP_180416.1
SMART:SM00835SMR:Q9SK09STRING:3702.AT2G28490.1SUPFAM:SSF51182
TAIR:AT2G28490TMHMM:TMhelixUniGene:At.14003UniProt:Q9SK09
Coordinates (TAIR10) chr2:-:12178812..12180983
Molecular Weight (calculated) 55708.40 Da
IEP (calculated) 6.08
GRAVY (calculated) -0.27
Length 511 amino acids
Sequence (TAIR10)
(BLAST)
001: MEKNKRAIGF LLLVVLINGV MMTRSNGYEG EEEWGGAGGG EWGGAEGGGA WGGGGGGGGA WGGEGEGGGE WGGGGEGGGG GRRGWFMMRE SRQVIKSEGG
101: EMRVVLSPRG RIIEKPMHIG FLTMEPKTLF VPQYLDSSLL IFIRQGEATL GVICKDEFGE RKLKAGDIYW IPAGSVFYLH NTGLGQRLHV ICSIDPTQSL
201: GFETFQPFYI GGGPSSVLAG FDPHTLTSAF NVSLPELQQM MMSQFRGPIV YVTEGPQPQP QSTVWTQFLG LRGEEKHKQL KKLLETKQGS PQDQQYSSGW
301: SWRNIVRSIL DLTEEKNKGS GSSECEDSYN IYDKKDKPSF DNKYGWSIAL DYDDYKPLKH SGIGVYLVNL TAGAMMAPHM NPTATEYGIV LAGSGEIQVV
401: FPNGTSAMNT RVSVGDVFWI PRYFAFCQIA SRTGPFEFVG FTTSAHKNRP QFLVGSNSLL RTLNLTSLSI AFGVDEETMR RFIEAQREAV ILPTPAAAPP
501: HVGEMVSDRF V
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)