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AT2G27940.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
nucleus 0.570
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
Description (TAIR10) protein_coding : RING/U-box superfamily protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
RING/U-box superfamily protein; FUNCTIONS IN: zinc ion binding; EXPRESSED IN: leaf apex, root, carpel, leaf; EXPRESSED DURING: LP.04 four leaves visible, 4 anthesis; CONTAINS InterPro DOMAIN/s: Zinc finger, RING-type (InterPro:IPR001841), Zinc finger, C3HC4 RING-type (InterPro:IPR018957); BEST Arabidopsis thaliana protein match is: RING/U-box superfamily protein (TAIR:AT3G05200.1); Has 9623 Blast hits to 9595 proteins in 286 species: Archae - 0; Bacteria - 0; Metazoa - 2405; Fungi - 805; Plants - 5009; Viruses - 51; Other Eukaryotes - 1353 (source: NCBI BLink).
Protein Annotations
BioGrid:2688eggNOG:ENOG41121N2eggNOG:KOG0800EMBL:AC006929EMBL:AK118539EMBL:BT005256EMBL:CP002685
EnsemblPlants:AT2G27940EnsemblPlants:AT2G27940.1entrez:817338Gene3D:3.30.40.10GeneID:817338Genevisible:Q9SJJ7GO:GO:0008270
GO:GO:0016021GO:GO:0016567Gramene:AT2G27940.1hmmpanther:PTHR14155hmmpanther:PTHR14155:SF102HOGENOM:HOG000034166InParanoid:Q9SJJ7
IntAct:Q9SJJ7InterPro:IPR001841InterPro:IPR013083KEGG:ath:AT2G27940OMA:RCIRRSCPaxDb:Q9SJJ7Pfam:PF13639
Pfam:Q9SJJ7Pfscan:PS50089PhylomeDB:Q9SJJ7PIR:G84678PRIDE:Q9SJJ7PRO:PR:Q9SJJ7PROSITE:PS50089
ProteinModelPortal:Q9SJJ7Proteomes:UP000006548RefSeq:NP_180361.1SMART:SM00184SMR:Q9SJJ7STRING:3702.AT2G27940.1SUPFAM:SSF57850
TAIR:AT2G27940TMHMM:TMhelixUniGene:At.38697UniPathway:UPA00143UniProt:Q9SJJ7
Coordinates (TAIR10) chr2:+:11897963..11898742
Molecular Weight (calculated) 26480.50 Da
IEP (calculated) 7.03
GRAVY (calculated) -0.28
Length 237 amino acids
Sequence (TAIR10)
(BLAST)
001: METKHLRKLL QLYQACGGEQ ELTKTVQNVT SSPLTPTPPP QPPSALDSTM ALTIFILLVA LFFMGFFSVY FRHFADSSSS TVDISSMPRT RSSRMSPRRL
101: STSVVVSRPY SFRRGLDSQA VRSLPVYRYT KAAKQRNEDC VICLSDFEEG ETVKVIPHCG HVFHVDCVDT WLSSYVTCPL CRSNQLFSDK DLGMQEPPDQ
201: DSAEEHDTCD GVDTCVRRCS SCSSLGQRTG LERSLSL
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)