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AT2G27690.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
endoplasmic reticulum 0.784
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : cytochrome P450, family 94, subfamily C, polypeptide 1
Curator
Summary (TAIR10)
Encodes a CYP94C1. Has highest omega-hydroxylase activity with 9,10-epoxystearic acid, while also metabolized lauric acid (C12:0) and C18 unsaturated fatty acids. Gene expression is induced in response to wounding and jasmonic acid treatment.
Computational
Description (TAIR10)
cytochrome P450, family 94, subfamily C, polypeptide 1 (CYP94C1); CONTAINS InterPro DOMAIN/s: Cytochrome P450 (InterPro:IPR001128), Cytochrome P450, E-class, group I (InterPro:IPR002401); BEST Arabidopsis thaliana protein match is: cytochrome P450, family 94, subfamily B, polypeptide 3 (TAIR:AT3G48520.1); Has 28009 Blast hits to 27927 proteins in 1460 species: Archae - 46; Bacteria - 2607; Metazoa - 10748; Fungi - 6059; Plants - 7560; Viruses - 3; Other Eukaryotes - 986 (source: NCBI BLink).
Protein Annotations
BioCyc:MetaCyc:AT2G27690-MONOMEREC:1.14.-.-eggNOG:COG2124eggNOG:KOG0157
EMBL:AC005824EMBL:AF370593EMBL:AF462844EMBL:BT026386
EMBL:CP002685EMBL:DQ201797EnsemblPlants:AT2G27690EnsemblPlants:AT2G27690.1
entrez:817315Gene3D:1.10.630.10GeneID:817315Genevisible:Q9ZUX1
GO:GO:0005506GO:GO:0009611GO:GO:0016021GO:GO:0018685
GO:GO:0020037GO:GO:0043231Gramene:AT2G27690.1gramene_pathway:1.14.13.-
gramene_pathway:2.7.7.-gramene_pathway:PWY-1121gramene_pathway:PWY-321gramene_pathway:PWY-5129
hmmpanther:PTHR24296hmmpanther:PTHR24296:SF7HOGENOM:HOG000237580InParanoid:Q9ZUX1
InterPro:IPR001128InterPro:IPR002401KEGG:ath:AT2G27690OMA:PVMIQER
PaxDb:Q9ZUX1Pfam:PF00067Pfam:Q9ZUX1PhylomeDB:Q9ZUX1
PIR:G84675PRIDE:Q9ZUX1PRINTS:PR00385PRINTS:PR00463
PRO:PR:Q9ZUX1ProteinModelPortal:Q9ZUX1Proteomes:UP000006548RefSeq:NP_180337.1
SMR:Q9ZUX1STRING:3702.AT2G27690.1SUPFAM:SSF48264TAIR:AT2G27690
tair10-symbols:CYP94C1TMHMM:TMhelixUniGene:At.13273UniProt:Q9ZUX1
Coordinates (TAIR10) chr2:+:11809373..11810860
Molecular Weight (calculated) 56572.50 Da
IEP (calculated) 8.13
GRAVY (calculated) -0.04
Length 495 amino acids
Sequence (TAIR10)
(BLAST)
001: MLLIISFTIV SFFFIIIFSL FHLLFLQKLR YCNCEICHAY LTSSWKKDFI NLSDWYTHLL RRSPTSTIKV HVLNSVITAN PSNVEHILKT NFHNYPKGKQ
101: FSVILGDLLG RGIFNSDGDT WRFQRKLASL ELGSVSVRVF AHEIVKTEIE TRLLPILTSF SDNPGSVLDL QDVFRRFSFD TISKLSFGFD PDCLRLPFPI
201: SEFAVAFDTA SLLSAKRALA PFPLLWKTKR LLRIGSEKKL QESINVINRL AGDLIKQRRL TGLMGKNDLI SRFMAVVAED DDEYLRDIVV SFLLAGRDTV
301: AAGLTGFFWL LTRHPEVENR IREELDRVMG TGFDSVTARC DEMREMDYLH ASLYESMRLF PPVQFDSKFA LNDDVLSDGT FVNSGTRVTY HAYAMGRMDR
401: IWGPDYEEFK PERWLDNEGK FRPENPVKYP VFQAGARVCI GKEMAIMEMK SIAVAIIRRF ETRVASPETT ETLRFAPGLT ATVNGGLPVM IQERS
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)