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AT2G24530.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
nucleus 1.000
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding :
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT4G31440.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410IKYHeggNOG:ENOG4112A4NEMBL:AY954799EMBL:CP002685
EnsemblPlants:AT2G24530EnsemblPlants:AT2G24530.1entrez:816989GeneID:816989
GO:GO:0070461Gramene:AT2G24530.1hmmpanther:PTHR21277hmmpanther:PTHR21277:SF8
HOGENOM:HOG000240434InterPro:IPR024738KEGG:ath:AT2G24530OMA:CELKEHI
Pfam:PF12767PhylomeDB:Q58G10Proteomes:UP000006548RefSeq:NP_180029.2
TAIR:AT2G24530UniGene:At.52896UniProt:Q58G10
Coordinates (TAIR10) chr2:+:10422597..10423820
Molecular Weight (calculated) 45759.50 Da
IEP (calculated) 9.38
GRAVY (calculated) -0.73
Length 407 amino acids
Sequence (TAIR10)
(BLAST)
001: MQRSQDQRIS LCELKEHIVK KTGVERSRRY FYYLGRFLSQ KLTKSEFDKT CLRLLGRENL SLHNQLIRSI LRNATVAKSP PPDHEAGHST KANAFQSRGD
101: GLEQSGTLIP NHSQHEPVWS NGVLPISPRK VRSGMQNRKS RDRPSPLGSN GKVEHMLHQP VCREDNRGSV GMENGDYQRS GRYVADEKDG EFLRPVEKPR
201: IPNKEKIAAV SMRDDQNQEE QARVNLSMSP LIAPLGIPFC SASVGGSPRT IPVSTNAELI SCYDSGGLPD IEMLRKRMEN IAVAQGLEGV SMECAKTLNN
301: MLDVYLKKLI NSCFDLVGAR STNGDPGKQR IGKQQSQNKI VNGVWPTNSL KIQTPNGSSD IRQDHHSVSM LDFRTAMELN PRQLGEDWPT LRERISLRSF
401: EEQDFEV
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)