suba logo
AT2G23430.1
Subcellular Consensus
(Prediction and Experimental)

min: heatmap :max

.
SUBAcon:
nucleus 1.000
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
Description (TAIR10) protein_coding : Cyclin-dependent kinase inhibitor family protein
Curator
Summary (TAIR10)
Encodes a cyclin-dependent kinase inhibitor protein that functions as a negative regulator of cell division and promoter of endoreduplication. A member of seven KRP genes found in Arabidopsis thaliana. Differential expression patterns for distinct KRPs were revealed by in situ hybridization. Both SKP2b and RKP appear to be involved in the degradation of KRP1.
Computational
Description (TAIR10)
ICK1; CONTAINS InterPro DOMAIN/s: Cyclin-dependent kinase inhibitor (InterPro:IPR003175), Cyclin-dependent kinase inhibitor, plant (InterPro:IPR016701); BEST Arabidopsis thaliana protein match is: KIP-related protein 2 (TAIR:AT3G50630.1); Has 507 Blast hits to 479 proteins in 88 species: Archae - 0; Bacteria - 19; Metazoa - 119; Fungi - 13; Plants - 208; Viruses - 0; Other Eukaryotes - 148 (source: NCBI BLink).
Protein Annotations
BioGrid:2227eggNOG:ENOG410J46PeggNOG:ENOG410Y3ZZEMBL:AC003040EMBL:AF079587EMBL:AK175492EMBL:AK176575
EMBL:AY085749EMBL:BT028986EMBL:CP002685EMBL:U94772EnsemblPlants:AT2G23430EnsemblPlants:AT2G23430.1entrez:816875
GeneID:816875Genevisible:Q67Y93GO:GO:0000082GO:GO:0004861GO:GO:0005634GO:GO:0005654GO:GO:0007050
GO:GO:0009737GO:GO:0010311GO:GO:0045736GO:GO:0045740GO:GO:0048366GO:GO:0048367GO:GO:0048527
Gramene:AT2G23430.1hmmpanther:PTHR10265hmmpanther:PTHR10265:SF24HOGENOM:HOG000113262InParanoid:Q67Y93IntAct:Q67Y93InterPro:IPR003175
InterPro:IPR016701KEGG:ath:AT2G23430ncoils:CoilOMA:RSRRIVYPANTHER:PTHR10265PaxDb:Q67Y93Pfam:PF02234
Pfam:Q67Y93PIR:T01132PIRSF:PIRSF017811PRO:PR:Q67Y93ProteinModelPortal:Q67Y93Proteomes:UP000006548RefSeq:NP_179924.1
SMR:Q67Y93STRING:3702.AT2G23430.1TAIR:AT2G23430tair10-symbols:ICK1tair10-symbols:KRP1UniGene:At.24577UniProt:Q67Y93
Coordinates (TAIR10) chr2:-:9977020..9977921
Molecular Weight (calculated) 22284.10 Da
IEP (calculated) 4.95
GRAVY (calculated) -1.08
Length 191 amino acids
Sequence (TAIR10)
(BLAST)
001: MVRKYRKAKG IVEAGVSSTY MQLRSRRIVY VRSEKSSSVS VVGDNGVSSS CSGSNEYKKK ELIHLEEEDK DGDTETSTYR RGTKRKLFEN LREEEKEELS
101: KSMENYSSEF ESAVKESLDC CCSGRKTMEE TVTAEEEEKA KLMTEMPTES EIEDFFVEAE KQLKEKFKKK YNFDFEKEKP LEGRYEWVKL E
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)