AT2G22010.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:nucleus 0.868 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : related to KPC1 | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
Encodes a protein predicted to act as a RING E3 ubiquitin ligase. It appears to regulate the stability of the KRP1/ICK1 cyclin dependent kinase inhibitor. Induced by beet severe curly virus (BSCTV) C4 protein. | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
| Computational Description (TAIR10) |
related to KPC1 (RKP); FUNCTIONS IN: zinc ion binding; INVOLVED IN: regulation of cell cycle, response to virus, proteolysis involved in cellular protein catabolic process; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Zinc finger, RING-type (InterPro:IPR001841), SPla/RYanodine receptor subgroup (InterPro:IPR018355), B302 (SPRY)-like (InterPro:IPR001870), SPla/RYanodine receptor SPRY (InterPro:IPR003877); Has 1690 Blast hits to 1529 proteins in 192 species: Archae - 0; Bacteria - 13; Metazoa - 1117; Fungi - 103; Plants - 141; Viruses - 2; Other Eukaryotes - 314 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr2:-:9363946..9368828 | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 144507.00 Da | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
| IEP (calculated) | 5.27 | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.17 | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
| Length | 1280 amino acids | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
0001: MAEDSLRVGM ISSGLAVLLN GEDAKENSSK ARIVPHFDYS GHRPLERTIE FIFGLAEKSV GPLDGQVDSS LIRAVIKNQF SKLHGDLDVS VSQREGISVV 0101: HHGVGPPIVG LEEFSICGDI RIVKPPLVLE SLALFSSARA NACIWKGKWM YEVALETSGI QQLGWATLAC PFTDQKGVGD ADDSYAFDGR RVSKWNKEAE 0201: PYGQSWVAGD VIGCCIDLNC DEIYFYRNGV SLGAAFTGIR KLGPGFGYYP AISLSQGERC ELNFGAYPFK YPVDGFQPLQ EAPTRFSFAT ELLRCFSRLL 0301: DRPDRSLADT LSRLRRFASV EELFCPVSSA ICDEFFYILE QDPLLAEYLG RGAFLSFLLE TFRTQAPHDS SSLDKVLDVF LEFPQSHLIF EHVVNALACG 0401: CKTATLILTE CPYSGPYPYL ALACHLFKRE ELMVQWWRSL HFEFLFEGFL SCRSSNKHDL QHLMPVVWWP GSSEDISYES SMGFTISALS EAINKIEEKQ 0501: RNLCLLVIQF IPPVSPPQLP GSAFRGFLQN LLLKNRGADR TLAPSGVTRN SVLVSLFSVI LHFLSEGFAM LKSSEAVHHN VGFLHRGGQQ KFPLSLFLKN 0601: DPHRADITRL GGLFSHISKS YPTDDQEEEI MRWEEGCMDD EQNRVTHATE QKPCCCLAYD TDLTKSLKDR GKNTAQSSRG RCSSIPERSS HVAAECSAGS 0701: FSEEIDDKPS TSNQSDPDFG YRPVRFMRTA LQESRISSAI LSEEELLDAL LLLYHIAVAP NFKQASYYMS HQSQSISLLE ETDKQIRERA SCDQIKRLKE 0801: ARNNYKEDVM DCVRHSAWFR ISLFSRWKQR GMYALCMWVV QLLLVLSKMD SVFVYIPEFY LESLVDCFHV LRKSDPPFVP STTFIKQGLS SFITFVVTHF 0901: NDSRISNTDL KDLLLQSISV LVQYKEYLEA FENNEAATRH MPAALLAAFD NRSWIPVTNI FLRLCKGSGF SSLKNGESSF SSTVFQALLR DACINDGELL 1001: STFLNRLFNT LSWTITEFSV SVREMQEKYQ VMEFQQRKCC VIFELSSNLA RVLEFCTYAM PQAFLAGTDT NLRRLTELIL FILNHMTSAV DDEFFDLSLR 1101: RQGQPSEKVS RGILLAPLVG IILNLLEASE DSKPKQQHDV IGLFASMDCP DTVYYGFQYL LEYNWDGCVS GDDAYVKKLG QLENFLSHLI NRASSQEPER 1201: KEESFNKDTT DIEDNTCCIC YAGEANAMIA PCSHRSCYGC ITRHLLNCQR CFFCNATVID VIRDKEEEEE EDDDGHKRST |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)