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AT2G17030.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
golgi 0.800
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
Description (TAIR10) protein_coding : F-box family protein with a domain of unknown function (DUF295)
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
CONTAINS InterPro DOMAIN/s: F-box domain, cyclin-like (InterPro:IPR001810), Protein of unknown function DUF295 (InterPro:IPR005174); BEST Arabidopsis thaliana protein match is: F-box family protein with a domain of unknown function (DUF295) (TAIR:AT2G17036.1); Has 414 Blast hits to 409 proteins in 12 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 414; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).
Protein Annotations
BioGrid:1563eggNOG:ENOG410IVD4eggNOG:ENOG410ZMUJEMBL:AK228215EMBL:BT029773EMBL:CP002685EnsemblPlants:AT2G17030
EnsemblPlants:AT2G17030.1entrez:816206GeneID:816206Genevisible:Q3EBZ2GO:GO:0005634GO:GO:0016567Gramene:AT2G17030.1
hmmpanther:PTHR13710hmmpanther:PTHR13710:SF83HOGENOM:HOG000029087InterPro:IPR001810InterPro:IPR005174KEGG:ath:AT2G17030OMA:ERTVKFK
PaxDb:Q3EBZ2Pfam:PF03478Pfam:Q3EBZ2PhylomeDB:Q3EBZ2PIR:C84547PRIDE:Q3EBZ2PRO:PR:Q3EBZ2
ProteinModelPortal:Q3EBZ2Proteomes:UP000006548RefSeq:NP_565401.1SMART:SM00256SMR:Q3EBZ2SUPFAM:SSF81383TAIR:AT2G17030
UniGene:At.40201UniPathway:UPA00143UniProt:Q3EBZ2
Coordinates (TAIR10) chr2:+:7399108..7400650
Molecular Weight (calculated) 46230.00 Da
IEP (calculated) 4.48
GRAVY (calculated) -0.13
Length 407 amino acids
Sequence (TAIR10)
(BLAST)
001: MVDWSTLPKD LLDLISKSLE SSFDLIQFRS VCSSWRSAAE PKSPLPTHHL PILPDNGGSL FPDSAVGFRL SQRSILLIKP HEPCIESDSF GWLIKVEEDL
101: NVPRKVTLLD PLCDTRNSIP ENFPRVLDMS KFKVRELGRE FKLHYFNTVG DIVESLYLEK AVVKYLDCDG DYKFVLLTIH VSGKLAVFRS WDRAWTVIND
201: MPSPYDDVML FDGRFFAVDN NGRTVVVDYS SLKLTLVASP VFGGDKKFLI ESCGEMLLVD MYLSLEAVEG DPGFVEEIFE HPAFYMNERT VKFKVYRFVE
301: REESWVDVYD LEDKMLFLGD DSTFSASASD ILPLCDGSSV FFNGNVFNGE DLGAMQDRDL GVFDFRSGKI ELVQKLPEYA KLFWPPPPWI TSHARAEDHI
401: GETSSQS
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)