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AT1G75180.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
nucleus 0.922
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : Erythronate-4-phosphate dehydrogenase family protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
Erythronate-4-phosphate dehydrogenase family protein; BEST Arabidopsis thaliana protein match is: Erythronate-4-phosphate dehydrogenase family protein (TAIR:AT1G19400.2); Has 146 Blast hits to 146 proteins in 19 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 146; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410IGXIeggNOG:ENOG410YCHAEMBL:AC025814EMBL:AK317157
EMBL:AY150399EMBL:CP002684EnsemblPlants:AT1G75180EnsemblPlants:AT1G75180.1
EnsemblPlants:AT1G75180.3entrez:843855ExpressionAtlas:Q9FRK9GeneID:843855
GO:GO:0016021Gramene:AT1G75180.1Gramene:AT1G75180.3hmmpanther:PTHR10996
hmmpanther:PTHR10996:SF123KEGG:ath:AT1G75180OMA:RNNGEASPhylomeDB:Q9FRK9
PIR:A96782Proteomes:UP000006548RefSeq:NP_565103.1RefSeq:NP_974146.1
STRING:3702.AT1G75180.1TAIR:AT1G75180TMHMM:TMhelixUniGene:At.43440
UniGene:At.48375UniProt:Q9FRK9
Coordinates (TAIR10) chr1:-:28216150..28217911
Molecular Weight (calculated) 35380.60 Da
IEP (calculated) 5.63
GRAVY (calculated) -0.48
Length 315 amino acids
Sequence (TAIR10)
(BLAST)
001: MVEPYETRNN GEASQMIRYQ SYNHHNSRLP SSLSSPLLDL RVFYVRISNF KVDHSTPEVL TITHIPLDPD SLLEINGVRM SMYSEGVSSQ LRRDRVDKKS
101: EVATFISTDN IRLSGSVKFE VYDKDELVLS GTLEMSGSNG FTGESKHSVK RWNMNCEAEI TAESGFLKEK HIGGSELSSP LPTIEVYVTG CFSGTPIILT
201: KTLQLGFRKK HGRVTALDSI PEYETDEPHK GNSSELDYQV TEYGSYKQEY EGEHSDMYWN REYADGEDGE MSWFNAGVRV GVGIGLGVCV GLGIGVGLLV
301: RTYQSTTRNF RRRII
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)