AT1G19400.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:cytosol 0.580 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : Erythronate-4-phosphate dehydrogenase family protein | ||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
Erythronate-4-phosphate dehydrogenase family protein; BEST Arabidopsis thaliana protein match is: Erythronate-4-phosphate dehydrogenase family protein (TAIR:AT1G75180.3); Has 144 Blast hits to 144 proteins in 19 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 144; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). | ||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr1:-:6712222..6713676 | ||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 33956.10 Da | ||||||||||||||||||||||||||||
| IEP (calculated) | 4.82 | ||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.45 | ||||||||||||||||||||||||||||
| Length | 303 amino acids | ||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MEEPCETLDS GEAYQISRYH NYNQHSSRSS SPWLDLRVFY VRISNFVVED STPEVLTINH IPLDPDTLLE INGVRMGMYS EGGSSQLRRD RVDKKSEEAT 101: YVSTDNIRLT GSVKFEVYDK NELVLSGTLE MSGSNGFTGE SKNRWKMNCE AEVTAGSGFL KEKSINGQEL SSPLPTIEVY VTGCFSGTPI ILTKTLQLGL 201: KKKQSRRMAL DAIPEYETAE PQKDTSYALD LQATTEYGNY KEEYEGDMYW RSECIDGEMS WFNAGVRVGV GIGLGVCVGL GIGVGLLVRT YQSTTRTFRR 301: RLL |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)