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AT1G61790.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
endoplasmic reticulum 1.000
What is SUBAcon?
What is ASURE?
SUBAcon computations
Predictors External Curations
AmiGO : endoplasmic reticulum 16618929
AmiGO : plasma membrane 17317660
AmiGO : plastid 15028209
TAIR : plasma membrane 17317660
TAIR : plastid 15028209
TAIR : endoplasmic reticulum 16618929
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:23493405 (2013): endoplasmic reticulum
  • PMID:26781341 (2016): plasma membrane
  • PMID:25900983 (2015): plant-type vacuole plant-type vacuole membrane
  • PMID:25900983 (2015): Golgi
  • PMID:25900983 (2015): Golgi Golgi apparatus Golgi membrane
  • PMID:25900983 (2015): Golgi trans-Golgi network early endosome
  • PMID:25641898 (2015): plasma membrane
  • PMID:22923678 (2012): endoplasmic reticulum
  • PMID:19334764 (2009): plasma membrane
  • PMID:17317660 (2007): plasma membrane
  • PMID:16618929 (2006): endoplasmic reticulum
  • PMID:15028209 (2004): plastid
SUBAcon links
AGI-AGI relationships
Coexpression PPI
Description (TAIR10) protein_coding : Oligosaccharyltransferase complex/magnesium transporter family protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
Oligosaccharyltransferase complex/magnesium transporter family protein; FUNCTIONS IN: oligosaccharide transmembrane transporter activity; INVOLVED IN: biological_process unknown; LOCATED IN: endoplasmic reticulum, plasma membrane, chloroplast; EXPRESSED IN: 26 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Magnesium transporter protein 1 (InterPro:IPR006844), Oligosaccharyltransferase complex/magnesium transporter (InterPro:IPR021149); BEST Arabidopsis thaliana protein match is: Oligosaccharyltransferase complex/magnesium transporter family protein (TAIR:AT1G11560.1); Has 387 Blast hits to 387 proteins in 136 species: Archae - 0; Bacteria - 0; Metazoa - 196; Fungi - 79; Plants - 91; Viruses - 0; Other Eukaryotes - 21 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410XR1FeggNOG:KOG2603EMBL:AC005882EMBL:AK176101EMBL:CP002684EnsemblPlants:AT1G61790EnsemblPlants:AT1G61790.1
entrez:842476GeneID:842476Genevisible:Q9SYB5GO:GO:0005783GO:GO:0005886GO:GO:0006487GO:GO:0008250
GO:GO:0009507GO:GO:0016021Gramene:AT1G61790.1hmmpanther:PTHR12692hmmpanther:PTHR12692:SF0HOGENOM:HOG000029710InParanoid:Q9SYB5
InterPro:IPR021149KEGG:ath:AT1G61790KO:K12669OMA:HTPMFLTPaxDb:Q9SYB5Pfam:PF04756Pfam:Q9SYB5
PhylomeDB:Q9SYB5PIR:G96643PRIDE:Q9SYB5PRO:PR:Q9SYB5ProteinModelPortal:Q9SYB5Proteomes:UP000006548RefSeq:NP_176372.1
STRING:3702.AT1G61790.1TAIR:AT1G61790TMHMM:TMhelixUniGene:At.50954UniGene:At.51572UniProt:Q9SYB5
Coordinates (TAIR10) chr1:+:22814390..22815430
Molecular Weight (calculated) 38808.30 Da
IEP (calculated) 9.78
GRAVY (calculated) 0.21
Length 346 amino acids
Sequence (TAIR10)
(BLAST)
001: MALKSKLVSL LFLIATLSST FAASFSDSDS DSDLLNELVS LRSTSESGVI HLDDHGISKF LTSASTPRPY SLLVFFDATQ LHSKNELRLQ ELRREFGIVS
101: ASFLANNNGS EGTKLFFCEI EFSKSQSSFQ LFGVNALPHI RLVSPSISNL RDESGQMDQS DYSRLAESMA EFVEQRTKLK VGPIQRPPLL SKPQIGIIVA
201: LIVIATPFII KRVLKGETIL HDTRLWLSGA IFIYFFSVAG TMHNIIRKMP MFLQDRNDPN KLVFFYQGSG MQLGAEGFAV GFLYTVVGLL LAFVTNVLVR
301: VKNITAQRLI MLLALFISFW AVKKVVYLDN WKTGYGIHPY WPSSWR
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)