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AT1G53840.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
golgi 0.976
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:26781341 (2016): plasma membrane
  • PMID:25900983 (2015): plant-type vacuole plant-type vacuole membrane
  • PMID:25900983 (2015): Golgi
  • PMID:25900983 (2015): Golgi trans-Golgi network
  • PMID:25900983 (2015): Golgi trans-Golgi network multivesicular body
  • PMID:25122472 (2014): Golgi Golgi apparatus
  • PMID:23903016 (2013): plant-type vacuole plant-type vacuole membrane
  • PMID:22923678 (2012): Golgi
  • PMID:22318864 (2012): plasma membrane
  • PMID:22215637 (2012): plasma membrane
  • PMID:21826108 (2012): Golgi trans-Golgi network multivesicular body
  • PMID:17644812 (2007): plasma membrane
  • PMID:17317660 (2007): plasma membrane
  • PMID:17151019 (2007): plant-type vacuole
  • PMID:14517339 (2003): plasma membrane
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : pectin methylesterase 1
Curator
Summary (TAIR10)
encodes a pectin methylesterase
Computational
Description (TAIR10)
pectin methylesterase 1 (PME1); FUNCTIONS IN: pectinesterase activity; INVOLVED IN: cell wall modification; LOCATED IN: extracellular region, plasma membrane, membrane, plant-type cell wall; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Pectinesterase, active site (InterPro:IPR018040), Pectin lyase fold/virulence factor (InterPro:IPR011050), Pectinesterase, catalytic (InterPro:IPR000070), Pectinesterase inhibitor (InterPro:IPR006501), Pectin lyase fold (InterPro:IPR012334); BEST Arabidopsis thaliana protein match is: pectinesterase family protein (TAIR:AT3G14300.1); Has 3031 Blast hits to 2961 proteins in 324 species: Archae - 8; Bacteria - 582; Metazoa - 1; Fungi - 194; Plants - 2221; Viruses - 0; Other Eukaryotes - 25 (source: NCBI BLink).
Protein Annotations
EC:3.1.1.11eggNOG:COG4677eggNOG:ENOG410IFEHEMBL:AK226427EnsemblPlants:AT1G53840EnsemblPlants:AT1G53840.1entrez:841821
ExpressionAtlas:Q0WWC7Gene3D:1.20.140.40Gene3D:2.160.20.10GeneID:841821GO:GO:0004857GO:GO:0005576GO:GO:0005618
GO:GO:0016021GO:GO:0030599GO:GO:0042545GO:GO:0045330GO:GO:0045490Gramene:AT1G53840.1gramene_pathway:3.1.1.11
gramene_pathway:PWY-1081hmmpanther:PTHR31707hmmpanther:PTHR31707:SF42HOGENOM:HOG000217409InterPro:IPR000070InterPro:IPR006501InterPro:IPR011050
InterPro:IPR012334InterPro:IPR018040InterPro:IPR033131KEGG:00040+3.1.1.11KEGG:00500+3.1.1.11KEGG:ath:AT1G53840ncoils:Coil
OMA:NSFKGYGPaxDb:Q0WWC7Pfam:PF01095Pfam:PF04043Pfam:Q43867PhylomeDB:Q0WWC7PRIDE:Q0WWC7
PROSITE:PS00503PROSITE:PS00800ProteinModelPortal:Q0WWC7RefSeq:NP_175787.1scanprosite:PS00503scanprosite:PS00800SMART:SM00856
SMR:Q0WWC7STRING:3702.AT1G53840.1SUPFAM:SSF101148SUPFAM:SSF51126TAIR:AT1G53840tair10-symbols:ATPME1tair10-symbols:PME1
TIGRfam:TIGR01614TIGRFAMs:TIGR01614TMHMM:TMhelixUniGene:At.24997UniPathway:UPA00545UniProt:Q0WWC7UniProt:Q43867
Coordinates (TAIR10) chr1:+:20101533..20103458
Molecular Weight (calculated) 64152.60 Da
IEP (calculated) 8.51
GRAVY (calculated) -0.21
Length 586 amino acids
Sequence (TAIR10)
(BLAST)
001: MDSVNSFKGY GKVDEAQDLA LKKKTRKRLL LLSISVVVLI AVIIAAVVAT VVHKNKNEST PSPPPELTPS TSLKAICSVT RFPESCISSI SKLPSSNTTD
101: PETLFKLSLK VIIDELDSIS DLPEKLSKET EDERIKSALR VCGDLIEDAL DRLNDTVSAI DDEEKKKTLS SSKIEDLKTW LSATVTDHET CFDSLDELKQ
201: NKTEYANSTI TQNLKSAMSR STEFTSNSLA IVSKILSALS DLGIPIHRRR RLMSHHHQQS VDFEKWARRR LLQTAGLKPD VTVAGDGTGD VLTVNEAVAK
301: VPKKSLKMFV IYVKSGTYVE NVVMDKSKWN VMIYGDGKGK TIISGSKNFV DGTPTYETAT FAIQGKGFIM KDIGIINTAG AAKHQAVAFR SGSDFSVYYQ
401: CSFDGFQDTL YPHSNRQFYR DCDVTGTIDF IFGSAAVVFQ GCKIMPRQPL SNQFNTITAQ GKKDPNQSSG MSIQRCTISA NGNVIAPTYL GRPWKEFSTT
501: VIMETVIGAV VRPSGWMSWV SGVDPPASIV YGEYKNTGPG SDVTQRVKWA GYKPVMSDAE AAKFTVATLL HGADWIPATG VINQLS
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)