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AT1G48840.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
plasma membrane 0.815
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : Plant protein of unknown function (DUF639)
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
Plant protein of unknown function (DUF639); CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF639 (InterPro:IPR006927); BEST Arabidopsis thaliana protein match is: Plant protein of unknown function (DUF639) (TAIR:AT3G18350.1); Has 149 Blast hits to 146 proteins in 12 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 149; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410IKQZeggNOG:ENOG410XRI5EMBL:AY074330EMBL:AY142617
EMBL:CP002684EnsemblPlants:AT1G48840EnsemblPlants:AT1G48840.1entrez:841306
GeneID:841306GO:GO:0016021Gramene:AT1G48840.1hmmpanther:PTHR31860
hmmpanther:PTHR31860:SF6HOGENOM:HOG000239747InterPro:IPR006927KEGG:ath:AT1G48840
OMA:YWLAVIRPfam:PF04842PhylomeDB:Q8VXZ2Proteomes:UP000006548
RefSeq:NP_175315.2TAIR:AT1G48840TMHMM:TMhelixUniGene:At.43673
UniGene:At.48292UniProt:Q8VXZ2
Coordinates (TAIR10) chr1:+:18061931..18064811
Molecular Weight (calculated) 77435.60 Da
IEP (calculated) 7.81
GRAVY (calculated) 0.10
Length 691 amino acids
Sequence (TAIR10)
(BLAST)
001: MSSRTMDVLE GLVKDSSLKW LLGKQSSFDE EIEEIENSPS AGANWIPELS PVANVVIRRC SKILGVAVSE LQDSFKQEAS ESVKQPSMFP RNFLEYCCFR
101: ALALSVGVTG HLSDKSFRRL TFDMMVAWEV PSAASQTLLS VDEDPTVGLE AFSRIAPAVP IIADVIICEN LFGILTSVSN SVRLQFYVYD KYLYGLERAI
201: KKMKSQSESS LLSGVRSKGE KILELDGTVT TQPVLEHIGI STWPGRLILT DHSLYFEAIK VVSFDTPKRY SLSDDLKQVI KPELTGPWGT RLFDKAVSYK
301: SISLPEPVVM EFPELKGHTR RDYWLAIILE VLYVHRYIKK FKINSVAKDE AISKAVLGIL RVQAIQEVGL TNPVRYENLL PFNLCDQLPG GDRILETLAE
401: MSSSRVLDRT AKAKEGTLHS ISASDMVSQL GLVFGATSPK SRSSLVVGEV MVGDVNPLEK AVKQSRKNYE KVVLAQETVN GVKVDGIDTN VAVMKELLLP
501: ATEIGNWLLS LVYWEDPLKS FVFCLLSTFI IYRGWIGYVF AIATLFIAGF MVLTRYFSNR EKVMIELKVM APPPMNTMEQ LLAVQNAISQ LEQLIQDANI
601: VLLKFRALLL SLFPQASEKF AVAIVIAATM MALVPWNNLI LVVFLELFTR YSPPRRASTE RLMRRLKEWW FSIPAAPVLL EQSKDDNKKT K
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)