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AT1G30000.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
golgi 1.000
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:25900983 (2015): Golgi Golgi apparatus Golgi membrane
  • PMID:25900983 (2015): Golgi trans-Golgi network
  • PMID:25900983 (2015): Golgi trans-Golgi network early endosome
  • PMID:22923678 (2012): Golgi
  • PMID:22430844 (2012): Golgi
  • PMID:16618929 (2006): Golgi
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : alpha-mannosidase 3
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
alpha-mannosidase 3 (MNS3); CONTAINS InterPro DOMAIN/s: Glycoside hydrolase, family 47 (InterPro:IPR001382); BEST Arabidopsis thaliana protein match is: alpha-mannosidase 2 (TAIR:AT3G21160.1); Has 2086 Blast hits to 1880 proteins in 193 species: Archae - 0; Bacteria - 12; Metazoa - 798; Fungi - 875; Plants - 191; Viruses - 0; Other Eukaryotes - 210 (source: NCBI BLink).
Protein Annotations
BioCyc:ARA:AT1G30000-MONOMERCAZy:GH47EC:3.2.1.113eggNOG:ENOG410XP04eggNOG:KOG2431EMBL:AC022455EMBL:AY054482
EMBL:AY093280EMBL:CP002684EnsemblPlants:AT1G30000EnsemblPlants:AT1G30000.1entrez:839879Gene3D:1.50.10.50GeneID:839879
Genevisible:Q93Y37GO:GO:0004559GO:GO:0004571GO:GO:0005509GO:GO:0005768GO:GO:0005783GO:GO:0005794
GO:GO:0005802GO:GO:0006491GO:GO:0016021GO:GO:0030433GO:GO:0097466Gramene:AT1G30000.1hmmpanther:PTHR11742
hmmpanther:PTHR11742:SF7HOGENOM:HOG000181987InParanoid:Q93Y37InterPro:IPR001382KEGG:00510+3.2.1.113KEGG:00513+3.2.1.113KEGG:ath:AT1G30000
KO:K01230OMA:SKRANPEPaxDb:Q93Y37Pfam:PF01532Pfam:Q93Y37PhylomeDB:Q93Y37PIR:H86423
PRIDE:Q93Y37PRINTS:PR00747PRO:PR:Q93Y37ProteinModelPortal:Q93Y37Proteomes:UP000006548Reactome:R-ATH-901032RefSeq:NP_564345.1
SMR:Q93Y37STRING:3702.AT1G30000.1SUPFAM:SSF48225SwissPalm:Q93Y37TAIR:AT1G30000tair10-symbols:MNS3TMHMM:TMhelix
UniGene:At.26476UniPathway:UPA00378UniProt:Q93Y37
Coordinates (TAIR10) chr1:-:10509532..10512320
Molecular Weight (calculated) 69072.90 Da
IEP (calculated) 7.10
GRAVY (calculated) -0.22
Length 624 amino acids
Sequence (TAIR10)
(BLAST)
001: MSKSLPYSVK DIHYDNAKFR HRSPLKVFSQ SLLTLSTKRN YASCSTGKFL ILILFFGVAC LMLMSKSPNE SGLNEKGKVT FVGGLRLGGL LRKPPRLPPR
101: LSPDEGQLRG SSTNGSTISN SDPKWAARQQ SVKEAFDHAW SGYRKYAMGY DELMPISQKG VDGLGGLGAT VVDALDTAMI MGLDNIVSEA GSWVETHLLE
201: RISQKGQVNL FETTIRVLGG LLSAYHLSGG EQGTVNMTHV GPKPVIYLNI AKDLADRLLS AFTSSPTPVP FCDVILHEST AHPAPGGASS TAEVASVQLE
301: FNYLSSISGD PKYSTEAMKV LAHIKTLPKT EGLVPIYISP QTGDFVGENI RLGSRGDSYY EYLIKVWLQQ GAKLNSNFTY LHDMYIEAMK GVRHLLVQNS
401: IPKGLVFVGE LPYGSKGEFS PKMDHLVCFL PGTLALGATK GLTKEQALKE NLLSFEDLEN LKLAEDLAKT CFEMYEVTAT GLAPEIAYFH TKDYTEDGLD
501: GGNKSSMYAN DIIIKPADRH NLLRPETVES LFVLYRITKD TKYRDQGWQI FEAFEKYTKV KSGGYTSLDD VTEVPPHRRD KMETFFLGET LKYLYLLFGD
601: DSVIPLDKFV FNTEAHPLPI RRNT
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)