AT1G26380.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:extracellular 1.000 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : FAD-binding Berberine family protein | ||||||||||||||||||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
FAD-binding Berberine family protein; FUNCTIONS IN: electron carrier activity, oxidoreductase activity, FAD binding, catalytic activity; LOCATED IN: endomembrane system; EXPRESSED IN: 9 plant structures; EXPRESSED DURING: LP.06 six leaves visible, LP.04 four leaves visible, 4 anthesis, LP.08 eight leaves visible; CONTAINS InterPro DOMAIN/s: FAD-binding, type 2 (InterPro:IPR016166), Berberine/berberine-like (InterPro:IPR012951), FAD linked oxidase, N-terminal (InterPro:IPR006094); BEST Arabidopsis thaliana protein match is: FAD-binding Berberine family protein (TAIR:AT1G26420.1); Has 4658 Blast hits to 4519 proteins in 693 species: Archae - 70; Bacteria - 2063; Metazoa - 19; Fungi - 1653; Plants - 670; Viruses - 0; Other Eukaryotes - 183 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr1:-:9126901..9128508 | ||||||||||||||||||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 59820.80 Da | ||||||||||||||||||||||||||||||||||||||||||||||||
| IEP (calculated) | 7.96 | ||||||||||||||||||||||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.18 | ||||||||||||||||||||||||||||||||||||||||||||||||
| Length | 535 amino acids | ||||||||||||||||||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MKEALFGLYL VLLVSGLEAA VTKPNSGNFI ECLRYQASPE NPITDAIFTV DNTTTFLSSY VSYTKNTRFS NPNNKNLLAI VVAKDVSHVQ ATVVCAKSNG 101: IQIRIRSGGH DNEGLSYVSS VPFVILDMHK LRDITVDVSS KKAWVQAGAT LGELYVKIDE ASQTLAFPAG ICATVGAGGH ISGGGYGNLM RKFGTTVDHV 201: IDAELVDVNG KLLNRSTMGE DLFWAIRGGG GASFGVILSW KINLVEVPKI FTVFQVNKTL EQGGTDVVYK WQLVANKFPD NLFLRAMPQV VNGTKHGERT 301: IAIVFWAQFL GRTDELMEIM NQSFPELGLR REDCQEMSWL NTTLFWAMLP AGTPKTVLLG RPTDPVFFKS KSDYVKKPIP KEGLEKIWKT MLKFNNIVWL 401: HFNPYGGMMD RIPSNATAFP HRKGNLFKVQ YYTTWLDPNA TESNLSIMKE LYEVAEPYVS SNPREAFFNY RDIDIGSNPS GETDVDEAKI YGYKYFLGNL 501: KRLMDVKAKS DPENFFKNEQ SIPPLLSRVR RDDEL |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)