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AT1G16370.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
vacuole 1.000
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:18710496 (2008): plant-type vacuole plant-type vacuole membrane
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : organic cation/carnitine transporter 6
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
organic cation/carnitine transporter 6 (OCT6); FUNCTIONS IN: carbohydrate transmembrane transporter activity, sugar:hydrogen symporter activity; INVOLVED IN: transport, transmembrane transport; LOCATED IN: integral to membrane, membrane; EXPRESSED IN: 11 plant structures; EXPRESSED DURING: LP.06 six leaves visible, 4 anthesis, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Major facilitator superfamily (InterPro:IPR020846), General substrate transporter (InterPro:IPR005828), Major facilitator superfamily, general substrate transporter (InterPro:IPR016196); BEST Arabidopsis thaliana protein match is: organic cation/carnitine transporter5 (TAIR:AT1G79410.1); Has 15766 Blast hits to 15675 proteins in 1589 species: Archae - 347; Bacteria - 7462; Metazoa - 3764; Fungi - 2418; Plants - 1153; Viruses - 0; Other Eukaryotes - 622 (source: NCBI BLink).
Protein Annotations
eggNOG:COG0477eggNOG:KOG0255EMBL:AC006341EMBL:AK229354
EMBL:CP002684EnsemblPlants:AT1G16370EnsemblPlants:AT1G16370.1entrez:838207
GeneID:838207Genevisible:Q9SA36GO:GO:0005524GO:GO:0006811
GO:GO:0009705GO:GO:0016021GO:GO:0022891GO:GO:0042631
GO:GO:0071472Gramene:AT1G16370.1hmmpanther:PTHR24064hmmpanther:PTHR24064:SF172
HOGENOM:HOG000234568InParanoid:Q9SA36InterPro:IPR005828InterPro:IPR020846
KEGG:ath:AT1G16370OMA:ISYYGVPPaxDb:Q9SA36Pfam:PF00083
Pfam:Q9SA36Pfscan:PS50850PhylomeDB:Q9SA36PIR:H86298
PRIDE:Q9SA36PRO:PR:Q9SA36PROSITE:PS50850ProteinModelPortal:Q9SA36
Proteomes:UP000006548Reactome:R-ATH-112311Reactome:R-ATH-181430Reactome:R-ATH-2161517
Reactome:R-ATH-442660Reactome:R-ATH-549127RefSeq:NP_173087.1STRING:3702.AT1G16370.1
SUPFAM:SSF103473TAIR:AT1G16370tair10-symbols:ATOCT6tair10-symbols:OCT6
TCDB:2.A.1.19.39TMHMM:TMhelixUniGene:At.41885UniProt:Q9SA36
Coordinates (TAIR10) chr1:+:5596762..5598327
Molecular Weight (calculated) 58354.50 Da
IEP (calculated) 6.65
GRAVY (calculated) 0.47
Length 521 amino acids
Sequence (TAIR10)
(BLAST)
001: MADPISEPLL SHLTDDSGVN EKTRLEALTF DKIVEQSLSD FGFWQFFQIS LVGLALLFDA QQIFITVYTD AYPTWHCLNH TICDPSASDI CKLPRSAWEW
101: DGGSQGKSVI SEFGLECSSS LLRGMPSSAF YIGAIVGGFF LALIPDDSLG RKKLVLFSTF AMSITSISVI FSTNVWIYTF LKFIIGFSRS QTWSYALVLI
201: SERVSTRWRP RATMIPFTLF VLGFMSLSGI AFLAQDSSWR YLYLYTSVPA VFYCIFLYLF ALESPRWLHM QGKDKEAIDV LTKMSPKEKA YLESVVSKLP
301: LKQENFEQAP TYSIKDFFFR KWAFRRILVV MIIMFGLGIS YYGVPLAARD IDVNIYLSET LNALVELPTF VITPILLERF NRRSSVLVNT LLGGASGVLC
401: FVLSILGKTE IAFAFELGTF FCARIGFNLM AVFMVEMFPT CVRSSATMMF RQALVVGGAC CPLIASIGRY IPSVSFAIFG IAMSGLGMFV LILPETKGLS
501: LCDSMEEQEK RDQAVNTSHV C
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)