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AT2G42760.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
nucleus 1.000
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding :
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
unknown protein; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF1685 (InterPro:IPR012881); Has 170 Blast hits to 164 proteins in 34 species: Archae - 0; Bacteria - 1; Metazoa - 26; Fungi - 10; Plants - 107; Viruses - 0; Other Eukaryotes - 26 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410J148eggNOG:ENOG410XZNNEMBL:AC006931EMBL:BT025795
EMBL:CP002685EnsemblPlants:AT2G42760EnsemblPlants:AT2G42760.1entrez:818876
GeneID:818876Gramene:AT2G42760.1hmmpanther:PTHR33785HOGENOM:HOG000029078
InterPro:IPR012881KEGG:ath:AT2G42760ncoils:CoilOMA:MSDETMM
Pfam:PF07939PhylomeDB:Q9SJI0PIR:H84857Proteomes:UP000006548
RefSeq:NP_181804.1STRING:3702.AT2G42760.1TAIR:AT2G42760UniGene:At.36972
UniProt:Q9SJI0
Coordinates (TAIR10) chr2:-:17796382..17797185
Molecular Weight (calculated) 30579.30 Da
IEP (calculated) 6.83
GRAVY (calculated) -0.90
Length 267 amino acids
Sequence (TAIR10)
(BLAST)
001: MAGEELLKLF EQNWSERPIF KKDKENLNGK SREKRGEKEI LEERREEEAL KNFPVSFLVE RAMSDETMMT TSSKTSLFSS SSDDLFLSPR SVLPVKPTPM
101: KLQTILSGKE VNAFTIAERE RLLSEKEEQR KKKKKKSNVR TRKGKSMSDL EYEELKGFMD LGFVFSEDDH KDSDLVSILP GLQRLVKKDD GVTKEEEEEE
201: EEDKIGGNRA ARPYLSEAWD HCGGRKGKKQ ITPEIKWRVP APAAASEVDL KDNLRLWAHA VASTIRS
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)