AT1G13910.1
|
Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:extracellular 1.000 What is SUBAcon? |
|
||||||||||||||||||||||||||||||||
| Experimental Localisations and PPI |
|
||||||||||||||||||||||||||||||||
|
SUBAcon links
AGI-AGI relationships |
|
||||||||||||||||||||||||||||||||
| Description (TAIR10) | protein_coding : Leucine-rich repeat (LRR) family protein | ||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
|||||||||||||||||||||||||||||||||
| Computational Description (TAIR10) |
Leucine-rich repeat (LRR) family protein; INVOLVED IN: signal transduction; LOCATED IN: endomembrane system; EXPRESSED IN: 7 plant structures; EXPRESSED DURING: 4 anthesis, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Leucine-rich repeat (InterPro:IPR001611); BEST Arabidopsis thaliana protein match is: Leucine-rich repeat (LRR) family protein (TAIR:AT5G61240.1); Has 85487 Blast hits to 26338 proteins in 1000 species: Archae - 30; Bacteria - 6164; Metazoa - 15752; Fungi - 920; Plants - 57746; Viruses - 0; Other Eukaryotes - 4875 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||
| Protein Annotations |
|
||||||||||||||||||||||||||||||||
| Coordinates (TAIR10) | chr1:+:4755955..4757814 | ||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 37025.50 Da | ||||||||||||||||||||||||||||||||
| IEP (calculated) | 9.48 | ||||||||||||||||||||||||||||||||
| GRAVY (calculated) | 0.04 | ||||||||||||||||||||||||||||||||
| Length | 330 amino acids | ||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MANLSLSLYL ILRIYALLLL FNVSFAKTLK RDMKALNEIK KLVGWRLVYS WVGDDPCGDG VLPPWSGVTC SKVGDYRVVV KLEVYSMSIV GNFPKAITKL 101: LDLTVLDMHN NKLTGPIPPE IGRLKRLITL NLRWNKLQQA LPPEIGGLKS LTYLYLSFNN FKGEIPKELA NLHELQYLHI QENHFTGRIP AELGTLQKLR 201: HLDAGNNNLV GSISDLFRIE GCFPALRNLF LNNNYLTGGL PNKLANLTNL EILYLSFNKM TGAIPAALAS IPRLTNLHLD HNLFNGSIPE AFYKHPNLKD 301: MYIEGNAFKS DVKAIGAHKV LELSDTDFLV |
||||||||||||||||||||||||||||||||
| See Also |
|
||||||||||||||||||||||||||||||||
Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)