AT1G13810.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:mitochondrion 1.000 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : Restriction endonuclease, type II-like superfamily protein | ||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
Restriction endonuclease, type II-like superfamily protein; FUNCTIONS IN: DNA binding, nuclease activity; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: YqaJ viral recombinase family (InterPro:IPR019080), Exonuclease, phage-type/RecB, C-terminal (InterPro:IPR011604), Restriction endonuclease, type II-like (InterPro:IPR011335); BEST Arabidopsis thaliana protein match is: Restriction endonuclease, type II-like superfamily protein (TAIR:AT1G67660.1); Has 316 Blast hits to 315 proteins in 62 species: Archae - 0; Bacteria - 48; Metazoa - 55; Fungi - 0; Plants - 63; Viruses - 14; Other Eukaryotes - 136 (source: NCBI BLink). | ||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr1:+:4734088..4735164 | ||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 35496.00 Da | ||||||||||||||||||||||||||||
| IEP (calculated) | 6.41 | ||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.60 | ||||||||||||||||||||||||||||
| Length | 303 amino acids | ||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MLRRVFYKRA RDDLSYCHRL LHIPYNEPEP DSKAISEIVG IVSKKEEAVV VTEPTHHWRK NWEDLRKNRL TASNFARAIG FSPDGRRNLW LEKIGAAKPF 101: AGNRATFWDI ENEVEALERY NELTGNEILI PEFVVYKNGE SPEENWLGAS PDGVINVVKD GVTSCGVLEV KCPFDNRDNS KVYPWKKVPY NCVPQLQGLM 201: EIVDTDWLDL YCWTRNGSSL FRVWRDTAFW EDMKPALFDF WQNHVLPARE IYNNFDIKDP QVKLREFKPK HWHEDCKKIM RGAERISANA NRLFYEIDGN 301: LVD |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)