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AT1G12970.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
cytosol 0.843
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : plant intracellular ras group-related LRR 3
Curator
Summary (TAIR10)
Encodes PIRL3, a member of the Plant Intracellular Ras-group-related LRRs (Leucine rich repeat proteins). PIRLs are a distinct, plant-specific class of intracellular LRRs that likely mediate protein interactions, possibly in the context of signal transduction.
Computational
Description (TAIR10)
plant intracellular ras group-related LRR 3 (PIRL3); CONTAINS InterPro DOMAIN/s: Leucine-rich repeat, typical subtype (InterPro:IPR003591), Leucine-rich repeat (InterPro:IPR001611); BEST Arabidopsis thaliana protein match is: plant intracellular ras group-related LRR 2 (TAIR:AT3G26500.1); Has 74858 Blast hits to 31563 proteins in 1228 species: Archae - 19; Bacteria - 7206; Metazoa - 30749; Fungi - 2417; Plants - 30057; Viruses - 17; Other Eukaryotes - 4393 (source: NCBI BLink).
Protein Annotations
eggNOG:COG4886eggNOG:KOG0619EMBL:AC012187EMBL:AY062103EMBL:AY124880EMBL:AY849573EMBL:CP002684
EnsemblPlants:AT1G12970EnsemblPlants:AT1G12970.1entrez:837855Gene3D:3.80.10.10GeneID:837855Genevisible:Q8W4Q3GO:GO:0004674
GO:GO:0046777Gramene:AT1G12970.1hmmpanther:PTHR23155hmmpanther:PTHR23155:SF516HOGENOM:HOG000239210InParanoid:Q8W4Q3InterPro:IPR001611
InterPro:IPR003591InterPro:IPR032675iPTMnet:Q8W4Q3KEGG:ath:AT1G12970ncoils:CoilOMA:RWEEMVEPaxDb:Q8W4Q3
Pfam:PF00560Pfam:PF13855Pfam:Q8W4Q3Pfscan:PS51450PhylomeDB:Q8W4Q3PIR:F86263PRIDE:Q8W4Q3
PRO:PR:Q8W4Q3PROSITE:PS51450ProteinModelPortal:Q8W4Q3Proteomes:UP000006548RefSeq:NP_563921.1SMART:SM00369SMR:Q8W4Q3
STRING:3702.AT1G12970.1SUPFAM:SSF52058TAIR:AT1G12970tair10-symbols:PIRL3UniGene:At.27354UniProt:Q8W4Q3
Coordinates (TAIR10) chr1:+:4423727..4425632
Molecular Weight (calculated) 51650.50 Da
IEP (calculated) 4.41
GRAVY (calculated) -0.19
Length 464 amino acids
Sequence (TAIR10)
(BLAST)
001: MDHDLEIFPL LSYVLHHSDP ASHAPPSLAI QQSLANRYPL LTNPYVISSL IESIPSTITQ TLFVFGSLGP RPDPLAVSSA RSKIREIKEN DSLSPEDAAK
101: EEQVYAAVVS LEEVHEGYEK QLRDLEEEIG RVYASAVESL SGGDEVNEEV LAVIKDAEDG GVVERIDLSD HELKLLPDAL GKIVGLVSLN VSRNNLRFLP
201: DTISGLEKLE ELDLSSNRLV FLPDSIGLLL NLRILNVTGN KLTLLPESIA QCRSLVELDA SFNNLTSLPA NFGYGLLNLE RLSIQLNKIR FFPNSICEMR
301: SLRYLDAHMN EIHGLPIAIG RLTNLEVMNL SSNFSDLIEL PDTISDLANL RELDLSNNQI RVLPDSFFRL EKLEKLNLDQ NPLEYPPQEM VNQSAEAVRE
401: FMRKRWEEMV EEEQLRSVIE AEKQQGGATG WLSWGSSIVT SLFSGGTHGG AAKKPKNSFL DEQL
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)