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AT3G17710.1
Subcellular Consensus
(Prediction and Experimental)
min: heatmap :max

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SUBAcon:
cytosol 0.990
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : F-box and associated interaction domains-containing protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
F-box and associated interaction domains-containing protein; CONTAINS InterPro DOMAIN/s: F-box domain, cyclin-like (InterPro:IPR001810), F-box domain, Skp2-like (InterPro:IPR022364), F-box associated domain, type 1 (InterPro:IPR006527), F-box associated interaction domain (InterPro:IPR017451); BEST Arabidopsis thaliana protein match is: F-box and associated interaction domains-containing protein (TAIR:AT3G18340.1); Has 1766 Blast hits to 1720 proteins in 37 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 1764; Viruses - 0; Other Eukaryotes - 2 (source: NCBI BLink).
Protein Annotations
EMBL:AB022219EMBL:AK117783EMBL:AY087962EMBL:CP002686
EnsemblPlants:AT3G17710EnsemblPlants:AT3G17710.1entrez:821038GeneID:821038
Genevisible:Q9LUM6Gramene:AT3G17710.1hmmpanther:PTHR32133hmmpanther:PTHR32133:SF127
HOGENOM:HOG000112505InParanoid:Q9LUM6InterPro:IPR001810InterPro:IPR006527
InterPro:IPR017451iPTMnet:Q9LUM6KEGG:ath:AT3G17710OMA:TIMACDG
PaxDb:Q9LUM6Pfam:PF00646Pfam:PF07734Pfam:Q9LUM6
Pfscan:PS50181PhylomeDB:Q9LUM6PRIDE:Q9LUM6PRO:PR:Q9LUM6
PROSITE:PS50181ProteinModelPortal:Q9LUM6Proteomes:UP000006548RefSeq:NP_566586.1
SMART:SM00256SMR:Q9LUM6SUPFAM:SSF81383TAIR:AT3G17710
TIGRfam:TIGR01640TIGRFAMs:TIGR01640UniGene:At.38674UniProt:Q9LUM6
Coordinates (TAIR10) chr3:+:6055597..6056703
Molecular Weight (calculated) 43423.60 Da
IEP (calculated) 7.48
GRAVY (calculated) -0.18
Length 368 amino acids
Sequence (TAIR10)
(BLAST)
001: MASVKLPWDL EEEILSRLPP RSLVRFRTVC KHWNGLFSDK RFVKKHLVRA RPQFIFLTES KKMYSIEIDL GGTIEVREVP YDFHCQPMKK NFTTIMACDG
101: LLFRDFWKQG VAVWNPWLRQ VGWIEYEDKG FRFCGVGYDS CKPDKCYKIL GYFNCTRRLS DSLQEGYYQA AIYECASQAF KFIDTPNPFN LWPNKDPLSV
201: NGNLYWLAHN HPETLEYFIE TFDFSMEIFK PFCLLPCRKD FGSNELVLAV FKEDRFSLLK QCFETTKIEI WVTKMKIDRE EEVVWIKFMT LPTTNLPNLD
301: DTYCCSSYFI FDKTIIMCCG DYKTGATCIY MVRGDMFKKI QINSGIFQFS YCVYLPNLIS VPFESHQV
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)