AT1G08060.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:nucleus 1.000 ASURE: nucleus What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : ATP-dependent helicase family protein | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
MORPHEUS MOLECULE (MOM); INVOLVED IN: chromatin silencing; LOCATED IN: nucleus; EXPRESSED IN: 17 plant structures; EXPRESSED DURING: 7 growth stages; BEST Arabidopsis thaliana protein match is: chromatin remodeling 4 (TAIR:AT5G44800.1); Has 8505 Blast hits to 7857 proteins in 726 species: Archae - 6; Bacteria - 999; Metazoa - 3217; Fungi - 2019; Plants - 785; Viruses - 95; Other Eukaryotes - 1384 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr1:-:2501981..2510488 | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 218581.00 Da | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
| IEP (calculated) | 5.03 | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.57 | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
| Length | 2001 amino acids | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
0001: MKKDEKIGLT GRTIYTRSLA ASIPASVEQE TPGLRRSSRG TPSTKVITPA SATRKSERLA PSPASVSKKS GGIVKNSTPS SLRRSNRGKT EVSLQSSKGS 0101: DNSIRKGDTS PDIEQRKDSV EESTDKIKPI MSARSYRALF RGKLKESEAL VDASPNEEEL VVVGCSRRIP AGNDDVQGKT DCPPPADAGS KRLPVDETSL 0201: DKGTDFPLKS VTETEKIVLD ASPIVETGDD SVIGSPSENL ETQKLQDGKT DCSPPANAES KTLPVGETSL EKEYPQKFQD DNTDCLPPAN AESKRLPVGE 0301: TSLEKDTDFP LKSTTETGKM VLYASPIVET RDDSVICSPS TNLETQKLLV SKTGLETDIV LPLKRKRDTA EIELDACATV ANGDDHVMSS DGVIPSPSGC 0401: KNDNRPEMCN TCKKRQKVNG DCQNRSVCSC IVQPVEESDN VTQDMKETGP VTSREYEENG QIQHGKSSDP KFYSSVYPEY WVPVQLSDVQ LEQYCQTLFS 0501: KSLSLSSLSK IDLGALEETL NSVRKTCDHP YVMDASLKQL LTKNLELHEI LDVEIKASGK LHLLDKMLTH IKKNGLKAVV FYQATQTPEG LLLGNILEDF 0601: VGQRFGPKSY EHGIYSSKKN SAINNFNKES QCCVLLLETR ACSQTIKLLR ADAFILFGSS LNPSHDVKHV EKIKIESCSE RTKIFRLYSV CTVEEKALIL 0701: ARQNKRQNKA VENLNRSLTH ALLMWGASYL FDKLDHFHSS ETPDSGVSFE QSIMDGVIHE FSSILSSKGG EENEVKLCLL LEAKHAQGTY SSDSTLFGED 0801: HIKLSDEESP NIFWSKLLGG KNPMWKYPSD TPQRNRKRVQ YFEGSEASPK TGDGGNAKKR KKASDDVTDP RVTDPPVDDD ERKASGKDHM GALESPKVIT 0901: LQSSCKSSGT DGTLDGNDAF GLYSMGSHIS GIPEDMLASQ DWGKIPDESQ RRLHTVLKPK MAKLCQVLHL SDACTSMVGN FLEYVIENHR IYEEPATTFQ 1001: AFQIALSWIA ALLVKQILSH KESLVRANSE LAFKCSRVEV DYIYSILSCM KSLFLEHTQG LQFDCFGTNS KQSVVSTKLV NESLSGATVR DEKINTKSMR 1101: NSSEDEECMT EKRCSHYSTA TRDIEKTISG IKKKYKKQVQ KLVQEHEEKK MELLNMYADK KQKLETSKSV EAAVIRITCS RTSTQVGDLK LLDHNYERKF 1201: DEIKSEKNEC LKSLEQMHDV AKKKLAEDEA CWINRIKSWA AKLKVCVPIQ SGNNKHFSGS SNISQNAPDV QICNNANVEA TYADTNCMAS KVNQVPEAEN 1301: TLGTMSGGST QQVHEMVDVR NDETMDVSAL SREQLTKSQS NEHASITVPE ILIPADCQEE FAALNVHLSE DQNCDRITSA ASDEDVSSRV PEVSQSLENL 1401: SASPEFSLNR EEALVTTENR RTSHVGFDTD NILDQQNRED CSLDQEIPDE LAMPVQHLAS VVETRGAAES DQYGQDICPM PSSLAGKQPD PAANTESENL 1501: EEAIEPQSAG SETVETTDFA ASHQGDQVTC PLLSSPTGNQ PAPEANIEGQ NINTSAEPHV AGPDAVESGD YAVIDQETMG AQDACSLPSG SVGTQSDLGA 1601: NIEGQNVTTV AQLPTDGSDA VVTGGSPVSD QCAQDASPMP LSSPGNHPDT AVNIEGLDNT SVAEPHISGS DACEMEISEP GPQVERSTFA NLFHEGGVEH 1701: SAGVTALVPS LLNNGTEQIA VQPVPQIPFP VFNDPFLHEL EKLRRESENS KKTFEEKKSI LKAELERKMA EVQAEFRRKF HEVEAEHNTR TTKIEKDKNL 1801: VIMNKLLANA FLSKCTDKKV SPSGAPRGKI QQLAQRAAQV SALRNYIAPQ QLQASSFPAP ALVSAPLQLQ QSSFPAPGPA PLQPQASSFP SSVSRPSALL 1901: LNFAVCPMPQ PRQPLISNIA PTPSVTPATN PGLRSPAPHL NSYRPSSSTP VATATPTSSV PPQALTYSAV SIQQQQEQQP QQSLSSGLQS NNEVVCLSDD 2001: E |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)