AT1G06570.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:peroxisome 0.995 ASURE: cytosol What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : phytoene desaturation 1 | ||||||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
Mutation of the PDS1 locus disrupts the activity of p-hydroxyphenylpyruvate dioxygenase (HPPDase), the first committed step in the synthesis of both plastoquinone and tocopherols in plants. | ||||||||||||||||||||||||||||||||||||
| Computational Description (TAIR10) |
phytoene desaturation 1 (PDS1); CONTAINS InterPro DOMAIN/s: 4-hydroxyphenylpyruvate dioxygenase (InterPro:IPR005956), Glyoxalase/bleomycin resistance protein/dioxygenase (InterPro:IPR004360); Has 2414 Blast hits to 2412 proteins in 817 species: Archae - 3; Bacteria - 1671; Metazoa - 206; Fungi - 158; Plants - 88; Viruses - 0; Other Eukaryotes - 288 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr1:-:2012015..2013543 | ||||||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 51923.50 Da | ||||||||||||||||||||||||||||||||||||
| IEP (calculated) | 5.96 | ||||||||||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.25 | ||||||||||||||||||||||||||||||||||||
| Length | 473 amino acids | ||||||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MCLSLASTAQ RNTQFRSRVL VLAELVKSMG HQNAAVSENQ NHDDGAASSP GFKLVGFSKF VRKNPKSDKF KVKRFHHIEF WCGDATNVAR RFSWGLGMRF 101: SAKSDLSTGN MVHASYLLTS GDLRFLFTAP YSPSLSAGEI KPTTTASIPS FDHGSCRSFF SSHGLGVRAV AIEVEDAESA FSISVANGAI PSSPPIVLNE 201: AVTIAEVKLY GDVVLRYVSY KAEDTEKSEF LPGFERVEDA SSFPLDYGIR RLDHAVGNVP ELGPALTYVA GFTGFHQFAE FTADDVGTAE SGLNSAVLAS 301: NDEMVLLPIN EPVHGTKRKS QIQTYLEHNE GAGLQHLALM SEDIFRTLRE MRKRSSIGGF DFMPSPPPTY YQNLKKRVGD VLSDDQIKEC EELGILVDRD 401: DQGTLLQIFT KPLGDRPTIF IEIIQRVGCM MKDEEGKAYQ SGGCGGFGKG NFSELFKSIE EYEKTLEAKQ LVG |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)