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AT5G67385.1
Subcellular Consensus
(Prediction and Experimental)
min: heatmap :max

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SUBAcon:
plasma membrane 1.000
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:31615849 (2019): plastid plastid thylakoid
  • PMID:30447334 (2019): plasma membrane
  • PMID:28865150 (2017): extracellular region plant-type cell wall
  • PMID:26781341 (2016): plasma membrane
  • PMID:25900983 (2015): Golgi
  • PMID:25900983 (2015): Golgi trans-Golgi network
  • PMID:25900983 (2015): Golgi trans-Golgi network early endosome
  • PMID:25641898 (2015): plasma membrane
  • PMID:23673981 (2013): plastid plastid stroma plastoglobules
  • PMID:22215637 (2012): plasma membrane
  • PMID:19334764 (2009): plasma membrane
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : Phototropic-responsive NPH3 family protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
Phototropic-responsive NPH3 family protein; FUNCTIONS IN: signal transducer activity; INVOLVED IN: response to light stimulus; CONTAINS InterPro DOMAIN/s: NPH3 (InterPro:IPR004249), BTB/POZ fold (InterPro:IPR011333), BTB/POZ-like (InterPro:IPR000210); BEST Arabidopsis thaliana protein match is: Phototropic-responsive NPH3 family protein (TAIR:AT3G49970.1); Has 920 Blast hits to 899 proteins in 47 species: Archae - 0; Bacteria - 4; Metazoa - 39; Fungi - 6; Plants - 863; Viruses - 0; Other Eukaryotes - 8 (source: NCBI BLink).
Protein Annotations
BioGrid:22116eggNOG:ENOG410IH0EeggNOG:ENOG410XRIYEMBL:AB007645
EMBL:BT015362EMBL:BT015895EMBL:BX829802EMBL:CP002688
EnsemblPlants:AT5G67385EnsemblPlants:AT5G67385.1entrez:836874GeneID:836874
GO:GO:0016567Gramene:AT5G67385.1hmmpanther:PTHR32370hmmpanther:PTHR32370:SF14
HOGENOM:HOG000239180InParanoid:Q66GP0IntAct:Q66GP0InterPro:IPR000210
InterPro:IPR011333InterPro:IPR027356iPTMnet:Q66GP0KEGG:ath:AT5G67385
ncoils:CoilOMA:KPIVDWWPaxDb:Q66GP0Pfam:PF00651
Pfam:PF03000Pfam:Q66GP0Pfscan:PS50097Pfscan:PS51649
PRIDE:Q66GP0PRO:PR:Q66GP0PROSITE:PS50097PROSITE:PS51649
ProteinModelPortal:Q66GP0Proteomes:UP000006548RefSeq:NP_680473.2SMART:SM00225
STRING:3702.AT5G67385.1SUPFAM:SSF54695TAIR:AT5G67385UniGene:At.45839
UniPathway:UPA00143UniProt:Q66GP0
Coordinates (TAIR10) chr5:+:26884754..26887083
Molecular Weight (calculated) 67562.60 Da
IEP (calculated) 8.09
GRAVY (calculated) -0.31
Length 604 amino acids
Sequence (TAIR10)
(BLAST)
001: MSAKKKDLLS SAMKRTSEWI SSQEVSSDVT VHVGEASFSL HKFPLMSKCG FIKKLVSESS KDSDSTVIKI PDIPGGSEAF ELAAKFCYGI NFDMSTENIA
101: MLRCAAEYLE MTEEHSVENL VVRAEAYLNE VALKSLSSSI TVLHKSEKLL PIAERVKLVS RCIDAIAYMT CQESHFCSPS SSNSGNNEVV VQQQSKQPVV
201: DWWAEDLTVL RIDSFQRVLI AMMARGFKQY GLGPVLMLYA QKSLRGLEIF GKGMKKIEPK QEHEKRVILE TIVSLLPREK NAMSVSFLSM LLRAAIFLET
301: TVACRLDLEN RMGLQLGQAV LDDLLIPSYS FTGDHSMFDT DTVQRILMNY LEFEVEGVRL SNNGVDLAGD MERVGKLLEN YMAEIASDRN VSLQKFIGLA
401: ELIPEQSRVT EDGMYRAVDI YLKAHPNMSD VERKKVCSLM DCQKLSREAC AHAAQNDRLP VQTIVQVLYY EQQRLRGEVT NDSDSPAPPP PQPAAVLPPK
501: LSSYTDELSK LKRENQDLKL ELLKMKMKLK EFEKESEKKT SSSTISTNPS SPISTASTGK PPLPRKSFIN SVSKKLGKLN PFSITPYNGR GRTKPPKDRR
601: HSIS
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)