AT5G61390.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:nucleus 0.997 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : Polynucleotidyl transferase, ribonuclease H-like superfamily protein | ||||||||||||||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
Polynucleotidyl transferase, ribonuclease H-like superfamily protein; FUNCTIONS IN: exonuclease activity, nucleic acid binding; INVOLVED IN: biological_process unknown; LOCATED IN: intracellular; CONTAINS InterPro DOMAIN/s: Exonuclease (InterPro:IPR006055), Polynucleotidyl transferase, ribonuclease H fold (InterPro:IPR012337), Exonuclease, RNase T/DNA polymerase III (InterPro:IPR013520); BEST Arabidopsis thaliana protein match is: Polynucleotidyl transferase, ribonuclease H-like superfamily protein (TAIR:AT5G07710.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr5:-:24678802..24680857 | ||||||||||||||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 54323.00 Da | ||||||||||||||||||||||||||||||||||||||||||||
| IEP (calculated) | 5.26 | ||||||||||||||||||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.26 | ||||||||||||||||||||||||||||||||||||||||||||
| Length | 487 amino acids | ||||||||||||||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MLTMVGLTPA EDRSEIAFFD VETTIPFRVG QGYAILEFGS ILVCPKKLVE LKNYSVLVRP ANLNLITPRS VKCNGIKRED VESALTFADI ADTVYDILHG 101: RIWAGHNILK FDCPRIREAF AEIGRDPPEP KGTIDSLALL TQRFGRRAGD MKMATLATYF GLGNQTHRSL DDVRMNFEVL KYCATVLFLE SSLPDELIEN 201: SVTTTTPETS SRRRRTIKKS PLQSPTDQQT GENMTTIPIL SFVSSAEAQT DPFDMSTLRN EIAPEVLQSD VPMEEEQNQQ SETVASEGTG DQEGFMELDK 301: ISVSSIRATH VPLYDGSQTM KLQLFLGDRP LQLHCPRLKV RFGINGKFMD KAGRRRLNFV IDLYPSLCNV LQECDSAAQT ISVDSGSGSD WNPLVIPMKG 401: FLNCPTARIH IPTELNGDID RYAAEIHQKE FSGATATQKL ISSNPKAEEI ESLLNPRTVL DAFLSLEPYD YQQRAGIRLV ARKLVIH |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)