AT5G60760.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:nucleus 0.871 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : P-loop containing nucleoside triphosphate hydrolases superfamily protein | ||||||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
P-loop containing nucleoside triphosphate hydrolases superfamily protein; BEST Arabidopsis thaliana protein match is: P-loop containing nucleoside triphosphate hydrolases superfamily protein (TAIR:AT3G45090.1); Has 1216 Blast hits to 969 proteins in 195 species: Archae - 93; Bacteria - 85; Metazoa - 220; Fungi - 67; Plants - 127; Viruses - 43; Other Eukaryotes - 581 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr5:+:24438465..24442004 | ||||||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 82545.40 Da | ||||||||||||||||||||||||||||||||||||
| IEP (calculated) | 5.92 | ||||||||||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.57 | ||||||||||||||||||||||||||||||||||||
| Length | 738 amino acids | ||||||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MTETTKVMYI VVVDGTDTAE TVEEDGTGTW KDSFRYTRPV LQSTLQLMGC KARHAFKISR RVFELIRSEG SLILSPSLSP SHSKESEFQK TGDASACANV 101: EKANKVNSLA TDDVDKSKSK PFEVYKRRTT VVVSREIFVN VVCDALAEYK YVGHDQRADL ILSCRIRERK ESVTVLLCGT SGCGKSTLSA LLGSRLGITT 201: VVSTDSIRHM MRSFVDEKQN PLLWASTYHA GEYLDPVAVA ESKARRRRAK KMDSIEDEKA KASEGGKAKN TQQTDVGSTK NTPVLLSPKQ MAVEGFKAQS 301: EMVIDNLDRL ITAWEERKES VIVEGVHLSL NFVMGLMKKH PSIVPFMVYI ANEEKHLERF AVRAKYMTLD PEKNKYVKYI RNIRTIQDYL CKRADKHLVP 401: KINNTNVDKS VAAIHATVFS CLRRREAGEH LYDATTNTVS VIDDEYRNQC TANSLSSKGM FQLIQRKGSS RHLMALLNTD GTFARTWPVT GKVDESGKPV 501: FCNEMIEENG MEHPVYGYLQ KAEPVNLQFG LFGISAWPSD GATSRAGSVD DCKADMAETS SRYYSSCCSS PRMSEGTSKE LKEDQSVHGS DEEVEDDPPE 601: PDTDFSDDDN KRDHDEVGSV DEQSTKSDEE YDDLAMEDKS YWTDEEEESR DTIAIMSEKN NKQATKEDKY IQNLDLFLRT ANQQLVEPLQ LCASLLTCEN 701: GNTRLWLGKE KMRKRSLSIS AIGKHGSGLG DAILLGAP |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)