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AT5G59000.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
plasma membrane 1.000
ASURE: plasma membrane
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : RING/FYVE/PHD zinc finger superfamily protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
RING/FYVE/PHD zinc finger superfamily protein; FUNCTIONS IN: zinc ion binding; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Zinc finger, C3HC4 RING-type (InterPro:IPR018957), Zinc finger, RING-CH-type (InterPro:IPR011016); BEST Arabidopsis thaliana protein match is: RING/FYVE/PHD zinc finger superfamily protein (TAIR:AT5G05830.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
Protein Annotations
eggNOG:COG5183eggNOG:KOG1609EMBL:BT024612EMBL:CP002688
EnsemblPlants:AT5G59000EnsemblPlants:AT5G59000.1entrez:836017Gene3D:3.30.40.10
GeneID:836017GO:GO:0008270GO:GO:0016021Gramene:AT5G59000.1
hmmpanther:PTHR23012hmmpanther:PTHR23012:SF83HOGENOM:HOG000238468InterPro:IPR011016
InterPro:IPR013083InterPro:IPR033275KEGG:00220+6.3.2.-KEGG:00261+6.3.2.-
KEGG:00380+6.3.2.-KEGG:ath:AT5G59000ncoils:CoilOMA:ETREQEC
PANTHER:PTHR23012Pfam:PF12906Pfscan:PS51292PhylomeDB:Q2HIG9
PROSITE:PS51292Proteomes:UP000006548RefSeq:NP_200708.1SMART:SM00744
SMR:Q2HIG9STRING:3702.AT5G59000.1SUPFAM:SSF57850TAIR:AT5G59000
TMHMM:TMhelixUniGene:At.29249unipathway:UPA00143UniProt:Q2HIG9
Coordinates (TAIR10) chr5:+:23818768..23820018
Molecular Weight (calculated) 25844.80 Da
IEP (calculated) 4.66
GRAVY (calculated) -0.89
Length 231 amino acids
Sequence (TAIR10)
(BLAST)
001: MPSFAFGSHH HLANPTDSPP YSVEISIDGD SSDWDSLSQV DLESGGVPAP EKQLHSGGKK RRTRRRKRRK KKKKKKGGRD CRICHLPLET NKEAEDEDEE
101: EEDDSDDDED EEDEEEEEEE EEEEYYGLPL QLGCSCKGDL GVAHSKCAET WFKIKGNMTC EICGAMALNV AGEQSNPEST ASTHSQAAAG QSLTQTEPRG
201: IWHGRPVMNF LLAAMVFAFV VSWLFHFKVL K
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)