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AT5G57740.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
plasma membrane 0.949
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : XB3 ortholog 2 in Arabidopsis thaliana
Curator
Summary (TAIR10)
ubiquitin ligase
Computational
Description (TAIR10)
XB3 ortholog 2 in Arabidopsis thaliana (XBAT32); FUNCTIONS IN: zinc ion binding; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Zinc finger, RING-type, conserved site (InterPro:IPR017907), Zinc finger, RING-type (InterPro:IPR001841), Ankyrin repeat-containing domain (InterPro:IPR020683), Ankyrin repeat (InterPro:IPR002110); BEST Arabidopsis thaliana protein match is: XB3 ortholog 3 in Arabidopsis thaliana (TAIR:AT5G07270.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink).
Protein Annotations
BioGrid:21126EC:6.3.2.-eggNOG:COG0666eggNOG:ENOG410IGT9
EMBL:AB018118EMBL:BT011688EMBL:BT012272EMBL:CP002688
EnsemblPlants:AT5G57740EnsemblPlants:AT5G57740.1entrez:835882Gene3D:1.25.40.20
GeneID:835882Genevisible:Q6NLQ8GO:GO:0004842GO:GO:0006511
GO:GO:0008270GO:GO:0009733GO:GO:0010311GO:GO:0010366
GO:GO:0016567GO:GO:0016874GO:GO:0051865Gramene:AT5G57740.1
hmmpanther:PTHR24128hmmpanther:PTHR24128:SF22HOGENOM:HOG000239563InParanoid:Q6NLQ8
InterPro:IPR001841InterPro:IPR002110InterPro:IPR017907InterPro:IPR020683
KEGG:ath:AT5G57740KO:K19044OMA:SIVNIAQPaxDb:Q6NLQ8
Pfam:PF12796Pfam:Q6NLQ8Pfscan:PS50088Pfscan:PS50089
Pfscan:PS50297PhylomeDB:Q6NLQ8PRIDE:Q6NLQ8PRINTS:PR01415
PRO:PR:Q6NLQ8PROSITE:PS00518PROSITE:PS50088PROSITE:PS50089
PROSITE:PS50297ProteinModelPortal:Q6NLQ8Proteomes:UP000006548RefSeq:NP_200582.3
scanprosite:PS00518SMART:SM00184SMART:SM00248SMR:Q6NLQ8
STRING:3702.AT5G57740.1SUPFAM:SSF48403SUPFAM:SSF57850TAIR:AT5G57740
tair10-symbols:XBAT32UniGene:At.29316UniPathway:UPA00143UniProt:Q6NLQ8
Coordinates (TAIR10) chr5:-:23394789..23397145
Molecular Weight (calculated) 54589.10 Da
IEP (calculated) 8.06
GRAVY (calculated) -0.03
Length 508 amino acids
Sequence (TAIR10)
(BLAST)
001: MRFLSLVGNS FGCSASGERL VSAARDGDLQ EAKALLDYNP RLARYSTFGV RNSPLHYSAA QGHHEIVSLL VESGVDINLR NYRGQTALMQ ACQHGHWEVV
101: LILILFGANI HRSDYLNGGT ALHLAALNGH PRCIRILLSE YIPSVPNCWS LLKNKKTSVA GFDSSVLHEV INRAADGGIT PLHVAALNGH IETVQLLLDL
201: GASVTQVTVE DGTTIDLIGA GSTALHYASC GGNTQCCQLL ISKGACLAAV NSNGWTPMMV ARSWHRNWLE EILNPTTEQP QLHLPNVPSP FLCLPLMSIV
301: NIAQECGWRE NDCLTPCRDP CAVCLERKCT VAADGCAHEF CTNCALYLST TSITSSKTSN VTPGSVPCPL CRNGIVSFTK LPHTTATTRT STSSRTSISL
401: SFCTCSSDVL DTALLTNPHY SCKPVVSRTG SRTPQSARSS AFRSLSCRRF PPSLCLGGSD VDEPRSRLIG GSYSRSGVGF RRSTSQVEGK RSWFSALNHC
501: VTTGGSAC
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)