AT5G57015.1
Subcellular Consensus
(Prediction and Experimental) min: :max .
SUBAcon:nucleus 0.763 What is SUBAcon? |
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Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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Description (TAIR10) | protein_coding : casein kinase I-like 12 | ||||||||||||||||||||||||||||||||||||||||||||||||
Curator Summary (TAIR10) |
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Computational Description (TAIR10) |
casein kinase I-like 12 (ckl12); FUNCTIONS IN: protein serine/threonine kinase activity, protein kinase activity, kinase activity, ATP binding; INVOLVED IN: protein amino acid phosphorylation; LOCATED IN: cytoplasm; CONTAINS InterPro DOMAIN/s: Protein kinase, ATP binding site (InterPro:IPR017441), Protein kinase, catalytic domain (InterPro:IPR000719), Serine/threonine-protein kinase-like domain (InterPro:IPR017442), Protein kinase-like domain (InterPro:IPR011009), Serine/threonine-protein kinase, active site (InterPro:IPR008271); BEST Arabidopsis thaliana protein match is: casein kinase 1 (TAIR:AT4G26100.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||||||||||||||
Protein Annotations |
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Coordinates (TAIR10) | chr5:+:23071508..23074577 | ||||||||||||||||||||||||||||||||||||||||||||||||
Molecular Weight (calculated) | 49403.90 Da | ||||||||||||||||||||||||||||||||||||||||||||||||
IEP (calculated) | 9.95 | ||||||||||||||||||||||||||||||||||||||||||||||||
GRAVY (calculated) | -0.62 | ||||||||||||||||||||||||||||||||||||||||||||||||
Length | 435 amino acids | ||||||||||||||||||||||||||||||||||||||||||||||||
Sequence (TAIR10) (BLAST) |
001: MEPRVGNKYR LGRKIGSGSF GEIYLGTHIQ TNEEVAIKLE NVKTKHPQLL YESKLYRILQ GGTGVPNIKW FGVEGDYNTL VMDLLGPSLE DLFNFCSRKL 101: SLKSVLMLAD QMINRVEYFH SKSFLHRDLK PDNFLMGLGR RANQVHIIDF GLAKKYRDNT THQHIPYREN KNLTGTARYA SMNTHLGIEQ SRRDDLESLG 201: YILMYFLKGS LPWQGLKAGT KKQKYERISE KKVSTSIESL CRGYPSEFAS YFHYCRSLRF DDKPDYGYLK RIFRDLFIRE GFQFDYVFDW TILKYQQSQL 301: TAPPSRGLVS PAVGTSAGLP PGLTSIDRYG GEEEGGRPPM DSSRRRMSGA LENSGNLSSR GPMMPSSSLF AQSAGSSRRV TSEELQRCRT GAGLRNSPVV 401: TTPEGKRSSS TRKHYDSAIK GIETLQVSDE RFHHH |
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See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)