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AT5G54710.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
plasma membrane 0.865
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : Ankyrin repeat family protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
Ankyrin repeat family protein; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; CONTAINS InterPro DOMAIN/s: Ankyrin repeat-containing domain (InterPro:IPR020683), Ankyrin repeat (InterPro:IPR002110); BEST Arabidopsis thaliana protein match is: Ankyrin repeat family protein (TAIR:AT1G34050.1); Has 20807 Blast hits to 11728 proteins in 551 species: Archae - 16; Bacteria - 1568; Metazoa - 11429; Fungi - 1235; Plants - 2476; Viruses - 139; Other Eukaryotes - 3944 (source: NCBI BLink).
Protein Annotations
eggNOG:COG0666eggNOG:KOG0504EMBL:CP002688EnsemblPlants:AT5G54710
EnsemblPlants:AT5G54710.1entrez:835560Gene3D:1.25.40.20GeneID:835560
GO:GO:0016021Gramene:AT5G54710.1hmmpanther:PTHR24177hmmpanther:PTHR24177:SF18
InParanoid:F4K1U0InterPro:IPR002110InterPro:IPR020683InterPro:IPR026961
KEGG:ath:AT5G54710PaxDb:F4K1U0Pfam:PF12796Pfam:PF13637
Pfam:PF13962Pfscan:PS50088Pfscan:PS50297PRIDE:F4K1U0
PROSITE:PS50088PROSITE:PS50297ProteinModelPortal:F4K1U0Proteomes:UP000006548
RefSeq:NP_200282.2SMART:SM00248SMR:F4K1U0STRING:3702.AT5G54710.1
SUPFAM:SSF48403TAIR:AT5G54710TMHMM:TMhelixUniGene:At.63903
UniProt:F4K1U0
Coordinates (TAIR10) chr5:-:22227665..22230500
Molecular Weight (calculated) 66046.10 Da
IEP (calculated) 6.57
GRAVY (calculated) 0.03
Length 598 amino acids
Sequence (TAIR10)
(BLAST)
001: MKINKQGQTA FILACLNNHL DAALTLVENM RSMTMVELDA AFTGQQPVII DKMLEKFPSL VLDVDEEQST LLHKAVTQRN EEYATKVIDL CPSLVSVTNV
101: DGNTPLHLAA EIGNINILWK MLETGEAECM KINKQGQTAF ILACLNNNVN SARILVEGTS SMTMVELNAA FSEQQQVIID SILEKFPNLI LDADEEQSTL
201: LHKACKSGNL EMARTLLDVD VNQEIAEKVD KDGLTPLHRA VINGSVEILK EFLCKAPSSF NITTQGTIET VFHLAAKYQK TKAFIFMAQS ANIRQLLYSL
301: DAEDNTVLHV AASVDSTSLV RHILSETTID VTLKNKKGFA AVDLIDKEGV DFPLLSLWFR DEAEKIQRPA RYVKFAHEPV ELIRNTNNGE KLSSESRAMD
401: LLREGRDPRN KEREMHSESL QNARNTITIV AVLIASVAFT CGINPPGGVH QDGPFIGKAT AGRTLAFKIF SVANNIALFT SLSIVTLLVS IISYRTKALK
501: MCVVIAHKMM WLAVASMATA YAASAWITVP HNEGSKWLVY TTSAIASVAL GSMFVYVSFM MVKHILKKDK LRRNQSHGKT PSTTLDMEAA GDVGCYWF
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)