AT5G54710.1
Subcellular Consensus
(Prediction and Experimental) min: :max .
SUBAcon:plasma membrane 0.865 What is SUBAcon? |
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Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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Description (TAIR10) | protein_coding : Ankyrin repeat family protein | ||||||||||||||||||||||||||||||||||||||||
Curator Summary (TAIR10) |
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Computational Description (TAIR10) |
Ankyrin repeat family protein; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; CONTAINS InterPro DOMAIN/s: Ankyrin repeat-containing domain (InterPro:IPR020683), Ankyrin repeat (InterPro:IPR002110); BEST Arabidopsis thaliana protein match is: Ankyrin repeat family protein (TAIR:AT1G34050.1); Has 20807 Blast hits to 11728 proteins in 551 species: Archae - 16; Bacteria - 1568; Metazoa - 11429; Fungi - 1235; Plants - 2476; Viruses - 139; Other Eukaryotes - 3944 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||||||
Protein Annotations |
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Coordinates (TAIR10) | chr5:-:22227665..22230500 | ||||||||||||||||||||||||||||||||||||||||
Molecular Weight (calculated) | 66046.10 Da | ||||||||||||||||||||||||||||||||||||||||
IEP (calculated) | 6.57 | ||||||||||||||||||||||||||||||||||||||||
GRAVY (calculated) | 0.03 | ||||||||||||||||||||||||||||||||||||||||
Length | 598 amino acids | ||||||||||||||||||||||||||||||||||||||||
Sequence (TAIR10) (BLAST) |
001: MKINKQGQTA FILACLNNHL DAALTLVENM RSMTMVELDA AFTGQQPVII DKMLEKFPSL VLDVDEEQST LLHKAVTQRN EEYATKVIDL CPSLVSVTNV 101: DGNTPLHLAA EIGNINILWK MLETGEAECM KINKQGQTAF ILACLNNNVN SARILVEGTS SMTMVELNAA FSEQQQVIID SILEKFPNLI LDADEEQSTL 201: LHKACKSGNL EMARTLLDVD VNQEIAEKVD KDGLTPLHRA VINGSVEILK EFLCKAPSSF NITTQGTIET VFHLAAKYQK TKAFIFMAQS ANIRQLLYSL 301: DAEDNTVLHV AASVDSTSLV RHILSETTID VTLKNKKGFA AVDLIDKEGV DFPLLSLWFR DEAEKIQRPA RYVKFAHEPV ELIRNTNNGE KLSSESRAMD 401: LLREGRDPRN KEREMHSESL QNARNTITIV AVLIASVAFT CGINPPGGVH QDGPFIGKAT AGRTLAFKIF SVANNIALFT SLSIVTLLVS IISYRTKALK 501: MCVVIAHKMM WLAVASMATA YAASAWITVP HNEGSKWLVY TTSAIASVAL GSMFVYVSFM MVKHILKKDK LRRNQSHGKT PSTTLDMEAA GDVGCYWF |
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See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)