AT5G53860.1
|
Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:plastid 1.000 What is SUBAcon? |
|
||||||||||||||||
| Experimental Localisations and PPI |
|
||||||||||||||||
|
SUBAcon links
AGI-AGI relationships |
|
||||||||||||||||
| Description (TAIR10) | protein_coding : embryo defective 2737 | ||||||||||||||||
| Curator Summary (TAIR10) |
A locus involved in embryogenesis. Mutations in this locus result in embryo lethality. | ||||||||||||||||
| Computational Description (TAIR10) |
embryo defective 2737 (emb2737); FUNCTIONS IN: molecular_function unknown; INVOLVED IN: embryo development ending in seed dormancy; LOCATED IN: chloroplast; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; Has 33 Blast hits to 32 proteins in 8 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 33; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). | ||||||||||||||||
| Protein Annotations |
|
||||||||||||||||
| Coordinates (TAIR10) | chr5:+:21865353..21868576 | ||||||||||||||||
| Molecular Weight (calculated) | 46157.50 Da | ||||||||||||||||
| IEP (calculated) | 8.51 | ||||||||||||||||
| GRAVY (calculated) | -0.45 | ||||||||||||||||
| Length | 402 amino acids | ||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MSRGPGRLIQ NVTQFADAQF KQFSTRYGQQ VIDILDFPIK LVLSPFTLAF DIAGSAPRGF GIPEFISKIS YLSVFAVATL GTYDIALDLG KKVICQRDCK 101: TCNGWQALRC TMCKGTGSVH YQIKDYNLRS GEKPTADCVA DAIVENRAEL VHLPSSFNHS APLPSKDCPT CDGTIMEPPW KAYNVLKKMD YPYEHIVHSM 201: KDPSIANFWL ITLPQIVGGF DYDEDVKKKI WWQYEESMRY DQLRDLVAKR NPGWEYLQDA LVSIDPVRAR EDPVIVKNVP YYKAKKSLEA EVTKLNPPPR 301: PQNWGELNLP LNISSWSEED LKNPAKLYEK TVLLNAQREI ADKILDAQWE AKWRQEKVEE MLEQKVRPYI QDSSMAVLPQ PILLKSQKKA QKGSRQRKWW 401: FF |
||||||||||||||||
| See Also |
|
||||||||||||||||
Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)