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AT5G53120.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
peroxisome 0.652
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:30783145 (2019): extracellular region plant-type cell wall
SUBAcon links
AGI-AGI relationships
Coexpression PPI
Description (TAIR10) protein_coding : spermidine synthase 3
Curator
Summary (TAIR10)
encodes a novel spermine synthase and is a paralog of previously characterized spermidine synthases, SPDS1 and SPDS2. SPDS3 forms heterodimers with SDPS2, which in turn forms heterodimers with SDPS1 in vivo. The gene does not complement speDelta3 deficiency of spermidine synthase in yeast but DOES complement speDelta4 deficiency.
Computational
Description (TAIR10)
spermidine synthase 3 (SPDS3); CONTAINS InterPro DOMAIN/s: Spermine synthase (InterPro:IPR001045); BEST Arabidopsis thaliana protein match is: spermidine synthase 1 (TAIR:AT1G23820.1); Has 5367 Blast hits to 5364 proteins in 1535 species: Archae - 174; Bacteria - 2998; Metazoa - 341; Fungi - 210; Plants - 426; Viruses - 0; Other Eukaryotes - 1218 (source: NCBI BLink).
Protein Annotations
BioCyc:ARA:GQT-2500-MONOMERBioCyc:ARA:GQT-2501-MONOMERBioCyc:ARA:GQT-2502-MONOMERBioCyc:ARA:GQT-2503-MONOMER
BioCyc:ARA:GQT-2504-MONOMERBioGrid:20637EC:2.5.1.22EMBL:AB025622
EMBL:AF424571EMBL:AK316822EMBL:AY040013EMBL:AY079367
EMBL:AY087226EMBL:BT000742EMBL:CP002688EnsemblPlants:AT5G53120
EnsemblPlants:AT5G53120.1EnsemblPlants:AT5G53120.2EnsemblPlants:AT5G53120.3EnsemblPlants:AT5G53120.4
EnsemblPlants:AT5G53120.5entrez:835392ExpressionAtlas:Q94BN2Gene3D:3.40.50.150
GeneID:835392Genevisible:Q94BN2GO:GO:0006597GO:GO:0016768
gramene_pathway:2.5.1.16gramene_pathway:2.5.1.22gramene_pathway:ARGSPECAT-PWYgramene_pathway:BSUBPOLYAMSYN-PWY
gramene_plant_reactome:1119317gramene_plant_reactome:1119343gramene_plant_reactome:6874958gramene_plant_reactome:6876576
HAMAP:MF_00198hmmpanther:PTHR11558hmmpanther:PTHR11558:SF25HOGENOM:HOG000256147
InParanoid:Q94BN2IntAct:Q94BN2InterPro:IPR001045InterPro:IPR029063
InterPro:IPR030373InterPro:IPR030374InterPro:IPR030668KEGG:00270+2.5.1.16
KEGG:00330+2.5.1.16KEGG:00410+2.5.1.16KEGG:00480+2.5.1.16KEGG:ath:AT5G53120
KO:K00797Pfam:PF01564Pfam:Q94BN2Pfscan:PS51006
PhylomeDB:Q94BN2PIRSF:PIRSF000502PRIDE:Q94BN2PRO:PR:Q94BN2
PROSITE:PS01330PROSITE:PS51006ProteinModelPortal:Q94BN2Proteomes:UP000006548
Reactome:R-ATH-351202RefSeq:NP_001078748.1RefSeq:NP_001078749.1RefSeq:NP_568785.1
RefSeq:NP_851178.1RefSeq:NP_851179.1scanprosite:PS01330SMR:Q94BN2
SUPFAM:SSF53335TAIR:AT5G53120tair10-symbols:ATSPDS3tair10-symbols:SPDS3
tair10-symbols:SPMSTIGRfam:TIGR00417TIGRFAMs:TIGR00417UniGene:At.21042
UniGene:At.49166unipathway:UPA00248UniPathway:UPA00249UniProt:Q94BN2
Coordinates (TAIR10) chr5:+:21535429..21537653
Molecular Weight (calculated) 39241.30 Da
IEP (calculated) 5.78
GRAVY (calculated) -0.04
Length 359 amino acids
Sequence (TAIR10)
(BLAST)
001: MEGDVGIGLV CQNTMDGKAS NGNGLEKTVP SCCLKAMACV PEDDAKCHST VVSGWFSEPH PRSGKKGGKA VYFNNPMWPG EAHSLKVEKV LFKDKSDFQE
101: VLVFESATYG KVLVLDGIVQ LTEKDECAYQ EMIAHLPLCS ISSPKNVLVV GGGDGGVLRE ISRHSSVEVI DICEIDKMVI DVSKKFFPEL AVGFDDPRVQ
201: LHIGDAAEFL RKSPEGKYDA IIVDSSDPVG PALALVEKPF FETLARALKP GGVLCNMAES MWLHTHLIED MISICRQTFK SVHYAWSSVP TYPSGVIGFV
301: LCSTEGPAVD FKNPINPIEK LDGAMTHKRE LKFYNSDMHR AAFALPTFLR REVASLLAS
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)