AT5G52882.1
|
Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:endoplasmic reticulum 0.957 What is SUBAcon? |
|
||||||||||||||||||||||||||||||||||||||||
| Experimental Localisations and PPI |
|
||||||||||||||||||||||||||||||||||||||||
|
SUBAcon links
AGI-AGI relationships |
|
||||||||||||||||||||||||||||||||||||||||
| Description (TAIR10) | protein_coding : P-loop containing nucleoside triphosphate hydrolases superfamily protein | ||||||||||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
|||||||||||||||||||||||||||||||||||||||||
| Computational Description (TAIR10) |
P-loop containing nucleoside triphosphate hydrolases superfamily protein; FUNCTIONS IN: nucleoside-triphosphatase activity, nucleotide binding, ATP binding; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: cultured cell; CONTAINS InterPro DOMAIN/s: ATPase, AAA-type, core (InterPro:IPR003959), ATPase, AAA+ type, core (InterPro:IPR003593), ATPase, AAA-type, conserved site (InterPro:IPR003960); BEST Arabidopsis thaliana protein match is: P-loop containing nucleoside triphosphate hydrolases superfamily protein (TAIR:AT4G28000.1); Has 40812 Blast hits to 38433 proteins in 3247 species: Archae - 1565; Bacteria - 18648; Metazoa - 4821; Fungi - 3639; Plants - 3257; Viruses - 39; Other Eukaryotes - 8843 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||||||
| Protein Annotations |
|
||||||||||||||||||||||||||||||||||||||||
| Coordinates (TAIR10) | chr5:-:21434155..21438362 | ||||||||||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 93012.90 Da | ||||||||||||||||||||||||||||||||||||||||
| IEP (calculated) | 6.18 | ||||||||||||||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.48 | ||||||||||||||||||||||||||||||||||||||||
| Length | 829 amino acids | ||||||||||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MEQKSVLLSA LGVGVGLGIG LASGQSLGRW ANGSGSVEDG LTGEQIEQEL IRQIVDGRES TVTFEEFPYF LSKRTRELLT SVAYVHLKEY DISKHTRNLA 101: PASKAILLSG PAEFYQQMLA KALSHYFESK LLLLDITDFS IKIQSKYGCT KREPFHKRSI SELTLDKVSS LMGSFSMLSQ REVEPRGTLR RHTSGNDLKS 201: RSTESSNRLP RHKRNASAAS DISSISSRSS SSVSASRKRT TNLCFDEKLF LQSLYKVLSS VSETTPLIIY LRDVEKLLES ERFYKLFQRL LNKLSGPVLI 301: LGSRVLEPED DCQEVDESIS ALFPYNIEIR PPEDESQLVS WKSRLEDDMK MIQFQDNKNH IAEVLAANDI QCDDLSSICH ADTMCLSNHI EEIVVSAITY 401: HLIHTKEPEY RNGKLVISSK SLSHGLSIFQ EGGNRSFEDS LKLDTNTDSK RKGGEVCSKS ESKSGPENKN ESEISLPSNK NDNPLPPKAP EVVPDNEFEK 501: RIRPEVIPAN EIGVTFADIG SLDETKDSLQ ELVMLPLRRP DLFQGGLLKP CRGILLFGPP GTGKTMLAKA IANEAGASFI NVSMSTITSK WFGEDEKNVR 601: ALFTLAAKVS PTIIFVDEVD SMLGQRTRVG EHEAMRKIKN EFMTHWDGLM TKPGERILVL AATNRPFDLD EAIIRRFERR IMVGLPSIES REKILRTLLS 701: KEKTENLDFH ELGQITEGYS GSDLKNLCIT AAYRPVRELI QQERLKDQER KKREEAGKGT EESKEEEAEA SEERVITLRP LNMEDMRKAK TQVAASFASE 801: GAGMNELKQW NDLYGEGGSR KKEQLTYFL |
||||||||||||||||||||||||||||||||||||||||
| See Also |
|
||||||||||||||||||||||||||||||||||||||||
Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)