suba logo
AT3G14870.1
Subcellular Consensus
(Prediction and Experimental)
min: heatmap :max

.
SUBAcon:
cytosol 0.946
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : Plant protein of unknown function (DUF641)
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
Plant protein of unknown function (DUF641); CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF641, plant (InterPro:IPR006943); BEST Arabidopsis thaliana protein match is: Plant protein of unknown function (DUF641) (TAIR:AT1G53380.3); Has 436 Blast hits to 433 proteins in 67 species: Archae - 9; Bacteria - 8; Metazoa - 66; Fungi - 13; Plants - 283; Viruses - 0; Other Eukaryotes - 57 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410IKI8eggNOG:ENOG410YB2TEMBL:AK317660EMBL:AP000370
EMBL:CP002686EnsemblPlants:AT3G14870EnsemblPlants:AT3G14870.1entrez:820716
ExpressionAtlas:Q9LKB7GeneID:820716Gramene:AT3G14870.1hmmpanther:PTHR31161
hmmpanther:PTHR31161:SF5HOGENOM:HOG000237632InterPro:IPR006943ncoils:Coil
OMA:LHCLAYSPfam:PF04859PhylomeDB:Q9LKB7Proteomes:UP000006548
RefSeq:NP_188105.3TAIR:AT3G14870UniGene:At.39152UniProt:Q9LKB7
Coordinates (TAIR10) chr3:+:5004159..5005586
Molecular Weight (calculated) 54741.40 Da
IEP (calculated) 9.31
GRAVY (calculated) -0.43
Length 475 amino acids
Sequence (TAIR10)
(BLAST)
001: MNLQMESVKP LDVVSSGKGK LRRTFAKVIN MKKLTGVVPE GNNKVERVKK SQEKVKLDKD LAKNAANLSE SFDKLEEEYE KRLAMEALLA KLFATISSIK
101: SGYAQLQYAQ SPYDPNGIQK ADNLVVAELK TLSELKQSFL KKQLDPNPDR TLVLAEIQEL RSVLKTYEIM GKKLECQLKL KDSEIIFLKE KFQESMTQNK
201: LMEKRLNQSG QLCNPLDHNL HLSAVSSTHF VTYLHHTVKS IRGFVKLMVE QMKLAAWDID MAAELIQPDV LYYKQDHKCF ALEHYVCKIM LEAFQLPYFS
301: NESSKKTSRE DKAMFFERFT ELRSMKPREY LASRPKSRLA KFCRTKYLQL IHPKMEQAFF GHLHQRNQVT AGEFPETSLC TAFLEMAKRV WLLHCLAFSF
401: DPEASIFQVS RGCRFSEVYM KSVSEEAFFS PEQEESSSET EPGVAFTVVP GFRIGKTTIQ CEVYLSRSCQ RRQSR
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)