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AT5G67470.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
plasma membrane 1.000
What is SUBAcon?
Predictors External Curations
AmiGO : cytoskeleton 15469496
AmiGO : nucleus 15469496
SwissProt : plasma membrane 16381842
TAIR : plasma membrane 17317660
TAIR : cytoskeleton 15469496
TAIR : nucleus 15469496
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : formin homolog 6
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
formin homolog 6 (FH6); FUNCTIONS IN: actin binding; INVOLVED IN: cellular component organization, actin cytoskeleton organization; LOCATED IN: in 7 components; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Actin-binding FH2/DRF autoregulatory (InterPro:IPR003104), Actin-binding FH2 (InterPro:IPR015425); BEST Arabidopsis thaliana protein match is: formin homology 1 (TAIR:AT3G25500.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410XQR0eggNOG:KOG1922EMBL:AB013390EMBL:AY337456
EMBL:CP002688EnsemblPlants:AT5G67470EnsemblPlants:AT5G67470.1entrez:836883
GeneID:836883Genevisible:Q9FJX6GO:GO:0003779GO:GO:0005618
GO:GO:0005634GO:GO:0005730GO:GO:0005737GO:GO:0005819
GO:GO:0005886GO:GO:0009524GO:GO:0016021Gramene:AT5G67470.1
hmmpanther:PTHR23213hmmpanther:PTHR23213:SF215HOGENOM:HOG000239832InParanoid:Q9FJX6
InterPro:IPR015425iPTMnet:Q9FJX6KEGG:ath:AT5G67470OMA:CKEVKTM
PaxDb:Q9FJX6Pfam:PF02181Pfam:Q9FJX6Pfscan:PS51444
PhylomeDB:Q9FJX6PRIDE:Q9FJX6PRO:PR:Q9FJX6PROSITE:PS51444
ProteinModelPortal:Q9FJX6Proteomes:UP000006548RefSeq:NP_201548.1SMART:SM00498
SMR:Q9FJX6STRING:3702.AT5G67470.1SUPFAM:SSF101447TAIR:AT5G67470
tair10-symbols:ATFH6tair10-symbols:FH6TMHMM:TMhelixUniGene:At.26995
UniProt:Q9FJX6
Coordinates (TAIR10) chr5:+:26926835..26930212
Molecular Weight (calculated) 98655.00 Da
IEP (calculated) 9.91
GRAVY (calculated) -0.59
Length 899 amino acids
Sequence (TAIR10)
(BLAST)
001: MKALQSRFFF FFFFYIFFSV SVSSEAHRRI LHQPLFPESS TPPPPDFQST PSPPLPDTPD QPFFPENPST PQQTLFPPPP PPVSADVNGG LPIPTATTQS
101: AKPGKKVAIV ISVGIVTLGM LSALAFFLYR HKAKHASDTQ KLVTGGGDGG GSRRFQEDSG PPTTTSSTFL YMGTVEPTRV SASESNGGTN GPVNSSPYRK
201: LNSAKRSERY RPSPELQPLP PLAKPPQPSD NSPSALSPSS SSSGEECRDT AFYTPHGSAI SSDDGYYTAF PRSANGSLPH SKRTSPRSKF GSAPTTAASR
301: SPEMKHVIIP SIKQKLPPPV QPPPLRGLES DEQELPYSQN KPKFSQPPPP PNRAAFQAIT QEKSPVPPPR RSPPPLQTPP PPPPPPPLAP PPPPQKRPRD
401: FQMLRKVTNS EATTNSTTSP SRKQAFKTPS PKTKAVEEVN SVSAGSLEKS GDGDTDPSKP KLKPLHWDKV RASSDRATVW DQLKSSSFQL NEDRMEHLFG
501: CNSGSSAPKE PVRRSVIPLA ENENRVLDPK KSQNIAILLR ALNVTREEVS EALTDGNPES LGAELLETLV KMAPTKEEEI KLREYSGDVS KLGTAERFLK
601: TILDIPFAFK RVEAMLYRAN FDAEVKYLRN SFQTLEEASL ELKASRLFLK LLEAVLMTGN RMNVGTNRGD AIAFKLDTLL KLVDIKGVDG KTTLLHFVVQ
701: EITRSEGTTT TKDETILHGN NDGFRKQGLQ VVAGLSRDLV NVKKSAGMDF DVLSSYVTKL EMGLDKLRSF LKTETTQGRF FDSMKTFLKE AEEEIRKIKG
801: GERKALSMVK EVTEYFHGNA AREEAHPLRI FMVVRDFLGV LDNVCKEVKT MQEMSTSMGS ASARSFRISA TASLPVLHRY KARQDDTSSD SEHSSNSST
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)