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AT5G47590.1
Subcellular Consensus
(Prediction and Experimental)
min: heatmap :max

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SUBAcon:
cytosol 0.994
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
Description (TAIR10) protein_coding : Heat shock protein HSP20/alpha crystallin family
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
Heat shock protein HSP20/alpha crystallin family; FUNCTIONS IN: aspartic-type endopeptidase activity; INVOLVED IN: proteolysis; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: Small heat shock protein, predicted, plant (InterPro:IPR016952), Peptidase A1 (InterPro:IPR001461), HSP20-like chaperone (InterPro:IPR008978); BEST Arabidopsis thaliana protein match is: HSP20-like chaperone (TAIR:AT4G16550.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
Protein Annotations
DNASU:834809eggNOG:ENOG410JJMUeggNOG:ENOG41119ZAEMBL:AB025628
EMBL:AY054549EMBL:BT003423EMBL:CP002688EnsemblPlants:AT5G47590
EnsemblPlants:AT5G47590.1entrez:834809Gene3D:2.60.40.790GeneID:834809
Gramene:AT5G47590.1HOGENOM:HOG000152460IntAct:Q9FGJ8InterPro:IPR008978
InterPro:IPR016952KEGG:ath:AT5G47590OMA:NTIAWDAPhylomeDB:Q9FGJ8
PIRSF:PIRSF030283Proteomes:UP000006548RefSeq:NP_199570.1STRING:3702.AT5G47590.1
SUPFAM:SSF49764TAIR:AT5G47590UniGene:At.26466UniProt:Q9FGJ8
Coordinates (TAIR10) chr5:-:19297945..19299099
Molecular Weight (calculated) 28946.50 Da
IEP (calculated) 6.29
GRAVY (calculated) -0.37
Length 264 amino acids
Sequence (TAIR10)
(BLAST)
001: MGETKADFRD MSRIPKVREG FYATNNQFQK AGPKGFVQVK VLENDNLYVR VDLPGVPDDA VRYRVDAVRQ KVVFFSGETL NNGKEGVRQY SGTAGLGCDC
101: CEITGVDAKM KDGVLRMILT RVKVVSKAQD NNNNKCTLTV PPFTGQSGIR LEDHPCLVSG RKGALIGVTK AGGGAHFAVD MPGVSPDDVE VYADEKEIRF
201: KAEIKDVYEH DESGRTYLGS VQSPFPALIS NNTIAWDAEF GVLRIAVIPP DDMTTINNKR NPIE
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)