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AT5G57850.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
plastid 1.000
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:31871212 (2020): mitochondrion
  • PMID:31520498 (2020): mitochondrion
  • PMID:31186290 (2019): plastid plastid stroma
  • PMID:30962257 (2019): plastid
  • PMID:30783145 (2019): extracellular region plant-type cell wall
  • PMID:28865150 (2017): extracellular region plant-type cell wall
  • PMID:24361574 (2014): plastid plastid stroma
  • PMID:24124904 (2013): plastid
  • PMID:23851315 (2013): plastid
  • PMID:23673981 (2013): plastid plastid stroma plastoglobules
  • PMID:22550958 (2012): plastid
  • PMID:21531424 (2011): plastid
  • PMID:20423899 (2010): plastid
  • PMID:20061580 (2010): plastid plastid stroma
  • PMID:18431481 (2008): plastid plastid stroma
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : D-aminoacid aminotransferase-like PLP-dependent enzymes superfamily protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
D-aminoacid aminotransferase-like PLP-dependent enzymes superfamily protein; FUNCTIONS IN: 4-amino-4-deoxychorismate lyase activity, catalytic activity; INVOLVED IN: tetrahydrofolate biosynthetic process; LOCATED IN: chloroplast; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Aminotransferase, class IV (InterPro:IPR001544); BEST Arabidopsis thaliana protein match is: D-aminoacid aminotransferase-like PLP-dependent enzymes superfamily protein (TAIR:AT3G05190.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
Protein Annotations
BioCyc:ARA:AT5G57850-MONOMERBioCyc:MetaCyc:AT5G57850-MONOMEREC:2.6.1.21EC:4.1.3.38
eggNOG:COG0115eggNOG:KOG0975EMBL:AB013396EMBL:AY099783
EMBL:AY128874EMBL:CP002688EnsemblPlants:AT5G57850EnsemblPlants:AT5G57850.1
entrez:835895ExpressionAtlas:Q8L493GeneID:835895Genevisible:Q8L493
GO:GO:0008153GO:GO:0008696GO:GO:0009507GO:GO:0009570
GO:GO:0046654GO:GO:0047810Gramene:AT5G57850.1gramene_pathway:4.1.3.38
gramene_pathway:PWY-3742gramene_plant_reactome:1119332gramene_plant_reactome:6873863hmmpanther:PTHR11825
hmmpanther:PTHR11825:SF48HOGENOM:HOG000016660InParanoid:Q8L493InterPro:IPR001544
KEGG:ath:AT5G57850KO:K18482OMA:SMGKMMAPANTHER:PTHR11825
PaxDb:Q8L493Pfam:PF01063Pfam:Q8L493PhylomeDB:Q8L493
PRIDE:Q8L493PRO:PR:Q8L493ProteinModelPortal:Q0WW83ProteinModelPortal:Q8L493
Proteomes:UP000006548RefSeq:NP_200593.2SMR:Q0WW83SMR:Q8L493
STRING:3702.AT5G57850.1SUPFAM:SSF56752TAIR:AT5G57850UniGene:At.7653
UniPathway:UPA00077UniProt:Q0WW83UniProt:Q8L493
Coordinates (TAIR10) chr5:-:23435548..23437287
Molecular Weight (calculated) 41067.30 Da
IEP (calculated) 8.56
GRAVY (calculated) 0.07
Length 373 amino acids
Sequence (TAIR10)
(BLAST)
001: MAGLSLEFTV NTWNLRSLSQ VPCPLRHGFR FPRRLTRRRT ILMCSDSSSQ SWNVPVLSSY EVGERLKLAR GGQQFLAMYS SVVDGITTDP AAMVLPLDDH
101: MVHRGHGVFD TALIINGYLY ELDQHLDRIL RSASMAKIPL PFDRETIKRI LIQTVSVSGC RDGSLRYWLS AGPGDFLLSP SQCLKPTLYA IVIKTNFAIN
201: PIGVKVVTSS IPIKPPEFAT VKSVNYLPNV LSQMEAEAKG AYAGIWVCKD GFIAEGPNMN VAFVVNGGKE LVMPRFDNVL SGCTAKRTLT LAEQLVSKGI
301: LKTVKVMDVT VEDGKKADEM MLIGSGIPIR PVIQWDEEFI GEGKEGPIAK ALLDLLLEDM RSGPPSVRVL VPY
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)