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AT5G47050.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
nucleus 1.000
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : SBP (S-ribonuclease binding protein) family protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
SBP (S-ribonuclease binding protein) family protein; FUNCTIONS IN: zinc ion binding; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Zinc finger, RING-type (InterPro:IPR001841), S-ribonuclease binding protein, SBP1, pollen (InterPro:IPR017066); BEST Arabidopsis thaliana protein match is: SBP (S-ribonuclease binding protein) family protein (TAIR:AT4G17680.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG4111S1XeggNOG:KOG1100EMBL:AB013394EMBL:AY063791
EMBL:AY091288EMBL:CP002688EnsemblPlants:AT5G47050EnsemblPlants:AT5G47050.1
entrez:834751GeneID:834751GO:GO:0004842GO:GO:0005634
GO:GO:0008270GO:GO:0031347Gramene:AT5G47050.1hmmpanther:PTHR10044
hmmpanther:PTHR10044:SF131HOGENOM:HOG000239367InterPro:IPR001841InterPro:IPR017066
KEGG:00220+6.3.2.-KEGG:00261+6.3.2.-KEGG:00380+6.3.2.-KEGG:ath:AT5G47050
KO:K19042ncoils:CoilOMA:ENSERHYPfam:PF13920
Pfscan:PS50089PhylomeDB:Q9FJQ8PIRSF:PIRSF036836PROSITE:PS50089
Proteomes:UP000006548RefSeq:NP_199516.1SMR:Q9FJQ8STRING:3702.AT5G47050.1
TAIR:AT5G47050UniGene:At.24049unipathway:UPA00144UniProt:Q9FJQ8
Coordinates (TAIR10) chr5:+:19106612..19107860
Molecular Weight (calculated) 33488.50 Da
IEP (calculated) 6.60
GRAVY (calculated) -0.60
Length 300 amino acids
Sequence (TAIR10)
(BLAST)
001: MAVQAHHHPS TLFFLNNGQE GNDQPHKSQF HSINAGVDTR KRAREVSSVI DLDITAAPMN PPPQTPPQVI GRRQNPNVVS TGLRLSREQS QNQEQRFLSF
101: PITGDVAGEI KSQTDELNRF LQIQGEQLKR MLAENSERNY RELLRTTEES VRRRLREKEA EIEKATRRHV ELEARATQIE TEARAWQMRA AAREAEATSL
201: QAQLHQAVVV AHGGGVITTV EPQSGSVDGV DEAEDAESAY VDPDRVEMIG PGCRICRRRS ATVLALPCRH LVMCTECDGS VRICPLCLST KNSSVEVFYS
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)