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AT5G24870.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
nucleus 1.000
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : RING/U-box superfamily protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
RING/U-box superfamily protein; FUNCTIONS IN: zinc ion binding; EXPRESSED IN: 20 plant structures; EXPRESSED DURING: 11 growth stages; CONTAINS InterPro DOMAIN/s: Zinc finger, RING-type (InterPro:IPR001841), Zinc finger, C3HC4 RING-type (InterPro:IPR018957); BEST Arabidopsis thaliana protein match is: RING/U-box superfamily protein (TAIR:AT5G10650.2); Has 13925 Blast hits to 9892 proteins in 386 species: Archae - 2; Bacteria - 791; Metazoa - 3360; Fungi - 995; Plants - 4460; Viruses - 70; Other Eukaryotes - 4247 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG41121N2eggNOG:KOG0800EMBL:AY136427EMBL:BT014966
EMBL:CP002688EnsemblPlants:AT5G24870EnsemblPlants:AT5G24870.1EnsemblPlants:AT5G24870.2
entrez:832556Gene3D:3.30.40.10GeneID:832556GO:GO:0008270
Gramene:AT5G24870.1Gramene:AT5G24870.2hmmpanther:PTHR22937hmmpanther:PTHR22937:SF53
HOGENOM:HOG000071011InterPro:IPR001841InterPro:IPR013083KEGG:ath:AT5G24870
ncoils:CoilOMA:PGKIQRGPfam:PF13639Pfscan:PS50089
PhylomeDB:Q8L775PROSITE:PS50089Proteomes:UP000006548RefSeq:NP_568462.2
RefSeq:NP_974832.1SMART:SM00184SMR:Q8L775SUPFAM:SSF57850
TAIR:AT5G24870UniGene:At.23213UniProt:Q8L775
Coordinates (TAIR10) chr5:-:8545008..8546923
Molecular Weight (calculated) 56795.40 Da
IEP (calculated) 9.76
GRAVY (calculated) -0.78
Length 520 amino acids
Sequence (TAIR10)
(BLAST)
001: MDGFKGKRTS RPIMPRKASG LVLHENMKKK DDKSVVPICS RIGCSSRVSS TKGDLIDHKA KATVSSFRSP LSGKETVGSS SRSMSGFGGT KKASKVIGRR
101: QLSSLLDMDS SESSSVNEDS PTSERSLPRG KTKESTISVH SESSVSGEVV TEAGSSSRGT GRSIHQRPDL VSRDARVSNS EQNARASVNK NGLRDLRNKS
201: GSDVLPSNST PTRKSNIFRK KTSDGESSSS SRGNKTEGSV VGGKNISSPQ GNGITMSEPR RNRNLPSVRD NSVVSSSTRR STGYYGRTGR AGAVATLQAP
301: RPPTRADLNP SRSAEASRSP LNSYSRPISS NGRLRSLMMP GSPSEAGLSR SLMNRDTFRR YNMNGVAEVL LALERIEQDE ELTYEQLAVL ETNLFLNGMS
401: SFHDQHRDMR LDIDNMSYEE LLALEEKMGT VSTALSEEAL LKSLKSSIYR PNDESDDICL NKDDDVKCSI CQEEYVDGDE VGTLPCQHKY HVSCAQQWLR
501: MKNWCPICKT SAESQPHPFS
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)