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AT5G46430.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
cytosol 1.000
ASURE: cytosol
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:31615849 (2019): plastid plastid thylakoid
  • PMID:31541795 (2020): plasma membrane
  • PMID:28865150 (2017): extracellular region plant-type cell wall
  • PMID:26572690 (2016): extracellular region plant-type cell wall
  • PMID:25900983 (2015): Golgi
  • PMID:25900983 (2015): Golgi Golgi apparatus Golgi membrane
  • PMID:25900983 (2015): Golgi trans-Golgi network
  • PMID:25900983 (2015): Golgi trans-Golgi network early endosome
  • PMID:25641898 (2015): plasma membrane
  • PMID:23396599 (2013): nucleus nuclear envelope nuclear inner membrane
  • PMID:22550958 (2012): plastid
  • PMID:22522809 (2012): cytosol cytosolic ribosomes
  • PMID:22318864 (2012): plasma membrane
  • PMID:21166475 (2011): cytosol
  • PMID:19334764 (2009): plasma membrane
  • PMID:17934214 (2008): cytosol
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : Ribosomal protein L32e
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
Ribosomal protein L32e; FUNCTIONS IN: structural constituent of ribosome; INVOLVED IN: translation, ribosome biogenesis; LOCATED IN: ribosome, cytosolic large ribosomal subunit; CONTAINS InterPro DOMAIN/s: Ribosomal protein L32e (InterPro:IPR001515), Ribosomal protein L32e, conserved site (InterPro:IPR018263); BEST Arabidopsis thaliana protein match is: Ribosomal protein L32e (TAIR:AT4G18100.1); Has 1473 Blast hits to 1473 proteins in 440 species: Archae - 299; Bacteria - 0; Metazoa - 710; Fungi - 138; Plants - 154; Viruses - 0; Other Eukaryotes - 172 (source: NCBI BLink).
Protein Annotations
BioGrid:19935eggNOG:COG1717eggNOG:KOG0878EMBL:AB019223
EMBL:AF446871EMBL:AY042872EMBL:AY052193EMBL:BT002551
EMBL:CP002688EnsemblPlants:AT5G46430EnsemblPlants:AT5G46430.1EnsemblPlants:AT5G46430.2
entrez:834686GeneID:834686Genevisible:Q9FHG2GO:GO:0003735
GO:GO:0005829GO:GO:0006412GO:GO:0022625Gramene:AT5G46430.1
Gramene:AT5G46430.2hmmpanther:PTHR23413HOGENOM:HOG000231288InParanoid:Q9FHG2
IntAct:Q9FHG2InterPro:IPR001515InterPro:IPR018263KEGG:ath:AT5G46430
KO:K02912OMA:THPAYRCPaxDb:Q9FHG2Pfam:PF01655
Pfam:Q9FHG2PhylomeDB:Q9FHG2PRIDE:Q9FHG2PRO:PR:Q9FHG2
ProDom:PD003823PROSITE:PS00580ProteinModelPortal:Q9FHG2Proteomes:UP000006548
Reactome:R-ATH-156827Reactome:R-ATH-1799339Reactome:R-ATH-72689Reactome:R-ATH-72706
Reactome:R-ATH-975956Reactome:R-ATH-975957RefSeq:NP_199455.1RefSeq:NP_851142.1
scanprosite:PS00580SMART:SM01393SMR:Q9FHG2STRING:3702.AT5G46430.1
SUPFAM:0037550SUPFAM:SSF52042TAIR:AT5G46430UniGene:At.20598
UniGene:At.43962UniGene:At.74152UniProt:Q9FHG2
Coordinates (TAIR10) chr5:+:18833429..18834409
Molecular Weight (calculated) 15476.10 Da
IEP (calculated) 11.45
GRAVY (calculated) -0.72
Length 133 amino acids
Sequence (TAIR10)
(BLAST)
001: MAVPLLTKKV VKKRSAKFIR PQSDRRITVK ESWRRPKGID SRVRRKFKGV TLMPNVGYGS DKKTRHYLPN GFKKFIVHNT SELELLMMHN RTYCAEIAHN
101: ISTKKRKAIV ERASQLDVVV SNKLGRLRSQ EDE
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)