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AT5G45040.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
plastid 1.000
ASURE: plastid
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : Cytochrome c
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
Cytochrome c; FUNCTIONS IN: electron carrier activity, iron ion binding, heme binding; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Cytochrome c, class I (InterPro:IPR003088), Cytochrome c domain (InterPro:IPR009056); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
Protein Annotations
BioGrid:19784eggNOG:ENOG410IXW8eggNOG:ENOG410Y8VDEMBL:AB010693
EMBL:AF372903EMBL:AJ438488EMBL:AY057729EMBL:CP002688
EnsemblPlants:AT5G45040EnsemblPlants:AT5G45040.1entrez:834535EvolutionaryTrace:Q93VA3
Gene3D:1.10.760.10GeneID:834535Genevisible:Q93VA3GO:GO:0009055
GO:GO:0009543GO:GO:0015979GO:GO:0020037GO:GO:0046872
GO:GO:0055114Gramene:AT5G45040.1hmmpanther:PTHR34688hmmpanther:PTHR34688:SF1
HOGENOM:HOG000242384InParanoid:Q93VA3InterPro:IPR009056KEGG:ath:AT5G45040
KO:K08906OMA:CIGCHYEPaxDb:Q93VA3PDB:2CE0
PDB:2CE1PDB:2DGEPDB:2V07PDBsum:2CE0
PDBsum:2CE1PDBsum:2DGEPDBsum:2V07Pfam:PF13442
Pfam:Q93VA3Pfscan:PS51007PhylomeDB:Q93VA3PRIDE:Q93VA3
PRO:PR:Q93VA3PROSITE:PS51007ProteinModelPortal:Q93VA3Proteomes:UP000006548
RefSeq:NP_568640.1SMR:Q93VA3STRING:3702.AT5G45040.1SUPFAM:SSF46626
TAIR:AT5G45040UniGene:At.30036UniGene:At.49131UniProt:Q93VA3
Coordinates (TAIR10) chr5:-:18175566..18176851
Molecular Weight (calculated) 19211.00 Da
IEP (calculated) 7.21
GRAVY (calculated) -0.26
Length 175 amino acids
Sequence (TAIR10)
(BLAST)
001: MRLVLSGASS FTSNLFCSSQ QVNGRGKELK NPISLNHNKD LDFLLKKLAP PLTAVLLAVS PICFPPESLG QTLDIQRGAT LFNRACIGCH DTGGNIIQPG
101: ATLFTKDLER NGVDTEEEIY RVTYFGKGRM PGFGEKCTPR GQCTFGPRLQ DEEIKLLAEF VKFQADQGWP TVSTD
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)