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AT5G44820.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
plasma membrane 0.984
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : Nucleotide-diphospho-sugar transferase family protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
Nucleotide-diphospho-sugar transferase family protein; CONTAINS InterPro DOMAIN/s: Nucleotide-diphospho-sugar transferase, predicted (InterPro:IPR005069); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT4G19970.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink).
Protein Annotations
DNASU:834512eggNOG:ENOG410JXFFeggNOG:ENOG411040UEMBL:BT026026
EMBL:CP002688EMBL:KJ138649EnsemblPlants:AT5G44820EnsemblPlants:AT5G44820.1
entrez:834512GeneID:834512GO:GO:0016740Gramene:AT5G44820.1
hmmpanther:PTHR24015hmmpanther:PTHR24015:SF419HOGENOM:HOG000238616InterPro:IPR005069
KEGG:ath:AT5G44820OMA:AFERCSQPfam:PF03407PhylomeDB:Q147R7
Proteomes:UP000006548RefSeq:NP_199295.2STRING:3702.AT5G44820.1TAIR:AT5G44820
TMHMM:TMhelixUniGene:At.30051UniProt:Q147R7
Coordinates (TAIR10) chr5:-:18095795..18097558
Molecular Weight (calculated) 42226.30 Da
IEP (calculated) 5.87
GRAVY (calculated) -0.24
Length 367 amino acids
Sequence (TAIR10)
(BLAST)
001: MSSSSSSSSS SSSSRSKFMD SGFIIGRKEL TRILILFLGL TASCLVLYKT AYPLQRLNVS NLTSLQASPS PLLPNLNSSE ISPETTKPKL SFKEILENAS
101: TKNNTVIITT LNQAWAEPNS LFDLFLESFR IGQGTQQLLK HVVVVCLDIK AFERCSQLHT NCYHIETSET DFSGEKVYNT PDYLKMMWAR IDLLTQVLEM
201: GFNFIFTDAD IMWLRDPFPR LYPDGDFQMA CDRFFGNPYD SDNWVNGGFT YVRSNNRSIE FYKFWHKSRL DYPDLHDQDV FNRIKHEPFI SEIGIQMRFF
301: DTVYFGGFCQ TSRDINLVCT MHANCCIGLD KKLHDLNLVL DDWRKYLSLS EPVQNTTWSV PMKCLED
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)